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VDR primary targets by genome-wide transcriptional profiling.
Goeman F, De Nicola F, D'Onorio De Meo P, Pallocca M, Elmi B, Castrignanò T, Pesole G, Strano S, Blandino G, Fanciulli M, Muti P. Goeman F, et al. Among authors: castrignano t. J Steroid Biochem Mol Biol. 2014 Sep;143:348-56. doi: 10.1016/j.jsbmb.2014.03.007. Epub 2014 Apr 13. J Steroid Biochem Mol Biol. 2014. PMID: 24726990 Free article.
Exploring the RNA editing potential of RNA-Seq data by ExpEdit.
D'Antonio M, Picardi E, Castrignanò T, D'Erchia AM, Pesole G. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2015;1269:327-38. doi: 10.1007/978-1-4939-2291-8_20. Methods Mol Biol. 2015. PMID: 25577388
Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas.
Botti E, Spallone G, Moretti F, Marinari B, Pinetti V, Galanti S, De Meo PD, De Nicola F, Ganci F, Castrignanò T, Pesole G, Chimenti S, Guerrini L, Fanciulli M, Blandino G, Karin M, Costanzo A. Botti E, et al. Among authors: castrignano t. Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13710-5. doi: 10.1073/pnas.1110931108. Epub 2011 Aug 1. Proc Natl Acad Sci U S A. 2011. PMID: 21807998 Free PMC article.
RAP: A Web Tool for RNA-Seq Data Analysis.
D'Antonio M, Libro P, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:393-415. doi: 10.1007/978-1-0716-1307-8_21. Methods Mol Biol. 2021. PMID: 33835454
Che-1-induced inhibition of mTOR pathway enables stress-induced autophagy.
Desantis A, Bruno T, Catena V, De Nicola F, Goeman F, Iezzi S, Sorino C, Ponzoni M, Bossi G, Federico V, La Rosa F, Ricciardi MR, Lesma E, De Meo PD, Castrignanò T, Petrucci MT, Pisani F, Chesi M, Bergsagel PL, Floridi A, Tonon G, Passananti C, Blandino G, Fanciulli M. Desantis A, et al. Among authors: castrignano t. EMBO J. 2015 May 5;34(9):1214-30. doi: 10.15252/embj.201489920. Epub 2015 Mar 14. EMBO J. 2015. PMID: 25770584 Free PMC article.
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Giulietti M, Piva F, D'Antonio M, D'Onorio De Meo P, Paoletti D, Castrignanò T, D'Erchia AM, Picardi E, Zambelli F, Principato G, Pavesi G, Pesole G. Giulietti M, et al. Among authors: castrignano t. Nucleic Acids Res. 2013 Jan;41(Database issue):D125-31. doi: 10.1093/nar/gks997. Epub 2012 Oct 30. Nucleic Acids Res. 2013. PMID: 23118479 Free PMC article.
RNA Editing Detection in HPC Infrastructures.
Lo Giudice C, Mansi L, Flati T, Gioiosa S, Chillemi G, Libro P, Castrignanò T, Pesole G, Picardi E. Lo Giudice C, et al. Among authors: castrignano t. Methods Mol Biol. 2021;2284:253-270. doi: 10.1007/978-1-0716-1307-8_14. Methods Mol Biol. 2021. PMID: 33835447
WEP: a high-performance analysis pipeline for whole-exome data.
D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T. D'Antonio M, et al. Among authors: castrignano t. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S11. doi: 10.1186/1471-2105-14-S7-S11. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815231 Free PMC article.
RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
D'Antonio M, D'Onorio De Meo P, Pallocca M, Picardi E, D'Erchia AM, Calogero RA, Castrignanò T, Pesole G. D'Antonio M, et al. Among authors: castrignano t. BMC Genomics. 2015;16(Suppl 6):S3. doi: 10.1186/1471-2164-16-S6-S3. Epub 2015 Jun 1. BMC Genomics. 2015. PMID: 26046471 Free PMC article.
62 results