Webb-Robertson BJ - Search Results

1

Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.

Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF 3rd, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, Sandoval JD, Lamarche BL, Matzke MM, Webb-Robertson BJ, Simons BC, McMahon BJ, Bhattacharya R, Perkins JD, Carithers RL Jr, Strom S, Self SG, Katze MG, Anderson GA, Smith RD. Baker ES, et al. Mol Cell Proteomics. 2014 Apr;13(4):1119-27. doi: 10.1074/mcp.M113.034595. Epub 2014 Jan 8. Mol Cell Proteomics. 2014. PMID: 24403597 Free PMC article.

2

Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.

Cannon WR, Jarman KH, Webb-Robertson BJ, Baxter DJ, Oehmen CS, Jarman KD, Heredia-Langner A, Auberry KJ, Anderson GA. Cannon WR, et al. J Proteome Res. 2005 Sep-Oct;4(5):1687-98. doi: 10.1021/pr050147v. J Proteome Res. 2005. PMID: 16212422

3

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics.

Callister SJ, Barry RC, Adkins JN, Johnson ET, Qian WJ, Webb-Robertson BJ, Smith RD, Lipton MS. Callister SJ, et al. J Proteome Res. 2006 Feb;5(2):277-86. doi: 10.1021/pr050300l. J Proteome Res. 2006. PMID: 16457593 Free PMC article.

4

Current trends in computational inference from mass spectrometry-based proteomics.

Webb-Robertson BJ, Cannon WR. Webb-Robertson BJ, et al. Brief Bioinform. 2007 Sep;8(5):304-17. doi: 10.1093/bib/bbm023. Epub 2007 Jun 20. Brief Bioinform. 2007. PMID: 17584764 Review.

5

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.

Webb-Robertson BJ, McCue LA, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG. Webb-Robertson BJ, et al. J Proteome Res. 2010 Nov 5;9(11):5748-56. doi: 10.1021/pr1005247. Epub 2010 Oct 8. J Proteome Res. 2010. PMID: 20831241 Free PMC article.

6

Improved quality control processing of peptide-centric LC-MS proteomics data.

Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson BJ. Matzke MM, et al. Bioinformatics. 2011 Oct 15;27(20):2866-72. doi: 10.1093/bioinformatics/btr479. Epub 2011 Aug 18. Bioinformatics. 2011. PMID: 21852304 Free PMC article.

7

Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.

Zhang H, Burnum KE, Luna ML, Petritis BO, Kim JS, Qian WJ, Moore RJ, Heredia-Langner A, Webb-Robertson BJ, Thrall BD, Camp DG 2nd, Smith RD, Pounds JG, Liu T. Zhang H, et al. Proteomics. 2011 Dec;11(23):4569-77. doi: 10.1002/pmic.201100037. Epub 2011 Nov 4. Proteomics. 2011. PMID: 21956884 Free PMC article.

8

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.

Webb-Robertson BJ, Matzke MM, Jacobs JM, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Proteomics. 2011 Dec;11(24):4736-41. doi: 10.1002/pmic.201100078. Epub 2011 Nov 17. Proteomics. 2011. PMID: 22038874 Free PMC article.

9

Plasma biomarkers for detecting Hodgkin's lymphoma in HIV patients.

Varnum SM, Webb-Robertson BJ, Hessol NA, Smith RD, Zangar RC. Varnum SM, et al. PLoS One. 2011;6(12):e29263. doi: 10.1371/journal.pone.0029263. Epub 2011 Dec 15. PLoS One. 2011. PMID: 22195036 Free PMC article.

10

Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp. novicida.

Varnum SM, Webb-Robertson BJ, Pounds JG, Moore RJ, Smith RD, Frevert CW, Skerrett SJ, Wunschel D. Varnum SM, et al. J Proteome Res. 2012 Jul 6;11(7):3690-703. doi: 10.1021/pr3001767. Epub 2012 Jun 22. J Proteome Res. 2012. PMID: 22663564 Free PMC article.

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