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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: zhang p. Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24225315 Free PMC article.
An evidence ontology for use in pathway/genome databases.
Karp PD, Paley S, Krieger CJ, Zhang P. Karp PD, et al. Among authors: zhang p. Pac Symp Biocomput. 2004:190-201. doi: 10.1142/9789812704856_0019. Pac Symp Biocomput. 2004. PMID: 14992503 Free article.
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD. Krieger CJ, et al. Among authors: zhang p. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42. doi: 10.1093/nar/gkh100. Nucleic Acids Res. 2004. PMID: 14681452 Free PMC article.
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD. Caspi R, et al. Among authors: zhang p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6. doi: 10.1093/nar/gkj128. Nucleic Acids Res. 2006. PMID: 16381923 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. Caspi R, et al. Among authors: zhang p. Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22. Nucleic Acids Res. 2010. PMID: 19850718 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: zhang p. Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53. doi: 10.1093/nar/gkr1014. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102576 Free PMC article.
AraCyc: a biochemical pathway database for Arabidopsis.
Mueller LA, Zhang P, Rhee SY. Mueller LA, et al. Among authors: zhang p. Plant Physiol. 2003 Jun;132(2):453-60. doi: 10.1104/pp.102.017236. Plant Physiol. 2003. PMID: 12805578 Free PMC article.
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