Pinello L - Search Results

1

Applications of alignment-free methods in epigenomics.

Pinello L, Lo Bosco G, Yuan GC. Pinello L, et al. Brief Bioinform. 2014 May;15(3):419-30. doi: 10.1093/bib/bbt078. Epub 2013 Nov 6. Brief Bioinform. 2014. PMID: 24197932 Free PMC article. Review.

2

A multi-layer method to study genome-scale positions of nucleosomes.

Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF. Di Gesù V, et al. Among authors: pinello l. Genomics. 2009 Feb;93(2):140-5. doi: 10.1016/j.ygeno.2008.09.012. Epub 2008 Nov 21. Genomics. 2009. PMID: 18951969 Free article.

3

Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI.

Sala A, Toto M, Pinello L, Gabriele A, Di Benedetto V, Ingrassia AM, Lo Bosco G, Di Gesù V, Giancarlo R, Corona DF. Sala A, et al. Among authors: pinello l. EMBO J. 2011 May 4;30(9):1766-77. doi: 10.1038/emboj.2011.98. Epub 2011 Mar 29. EMBO J. 2011. PMID: 21448136 Free PMC article.

4

A motif-independent metric for DNA sequence specificity.

Pinello L, Lo Bosco G, Hanlon B, Yuan GC. Pinello L, et al. BMC Bioinformatics. 2011 Oct 21;12:408. doi: 10.1186/1471-2105-12-408. BMC Bioinformatics. 2011. PMID: 22017798 Free PMC article.

5

Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis.

Xu J, Shao Z, Glass K, Bauer DE, Pinello L, Van Handel B, Hou S, Stamatoyannopoulos JA, Mikkola HK, Yuan GC, Orkin SH. Xu J, et al. Among authors: pinello l. Dev Cell. 2012 Oct 16;23(4):796-811. doi: 10.1016/j.devcel.2012.09.003. Epub 2012 Oct 4. Dev Cell. 2012. PMID: 23041383 Free PMC article.

6

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.

Giancarlo R, Lo Bosco G, Pinello L, Utro F. Giancarlo R, et al. Among authors: pinello l. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-14-S1-S6. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23369037 Free PMC article.

7

STAT5 outcompetes STAT3 to regulate the expression of the oncogenic transcriptional modulator BCL6.

Walker SR, Nelson EA, Yeh JE, Pinello L, Yuan GC, Frank DA. Walker SR, et al. Among authors: pinello l. Mol Cell Biol. 2013 Aug;33(15):2879-90. doi: 10.1128/MCB.01620-12. Epub 2013 May 28. Mol Cell Biol. 2013. PMID: 23716595 Free PMC article.

8

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium; Segal E, Stolovitzky G. Meyer P, et al. Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15. Genome Res. 2013. PMID: 23950146 Free PMC article.

9

An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level.

Bauer DE, Kamran SC, Lessard S, Xu J, Fujiwara Y, Lin C, Shao Z, Canver MC, Smith EC, Pinello L, Sabo PJ, Vierstra J, Voit RA, Yuan GC, Porteus MH, Stamatoyannopoulos JA, Lettre G, Orkin SH. Bauer DE, et al. Among authors: pinello l. Science. 2013 Oct 11;342(6155):253-7. doi: 10.1126/science.1242088. Science. 2013. PMID: 24115442 Free PMC article.

10

Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions.

Pulakanti K, Pinello L, Stelloh C, Blinka S, Allred J, Milanovich S, Kiblawi S, Peterson J, Wang A, Yuan GC, Rao S. Pulakanti K, et al. Among authors: pinello l. Epigenetics. 2013 Dec;8(12):1303-20. doi: 10.4161/epi.26597. Epub 2013 Oct 17. Epigenetics. 2013. PMID: 24135681 Free PMC article.

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