Knight R - Search Results

1

Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum.

Ponnusamy L, Gonzalez A, Van Treuren W, Weiss S, Parobek CM, Juliano JJ, Knight R, Roe RM, Apperson CS, Meshnick SR. Ponnusamy L, et al. Among authors: knight r. Appl Environ Microbiol. 2014 Jan;80(1):354-9. doi: 10.1128/AEM.02987-13. Epub 2013 Oct 25. Appl Environ Microbiol. 2014. PMID: 24162580 Free PMC article.

2

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.

Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, Henrissat B, Knight R, Gordon JI. Muegge BD, et al. Among authors: knight r. Science. 2011 May 20;332(6032):970-4. doi: 10.1126/science.1198719. Science. 2011. PMID: 21596990 Free PMC article.

3

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation.

Zaneveld JR, Parfrey LW, Van Treuren W, Lozupone C, Clemente JC, Knights D, Stombaugh J, Kuczynski J, Knight R. Zaneveld JR, et al. Among authors: knight r. Trends Microbiol. 2011 Oct;19(10):472-82. doi: 10.1016/j.tim.2011.07.006. Epub 2011 Aug 25. Trends Microbiol. 2011. PMID: 21872475 Free PMC article. Review.

4

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R. Kuczynski J, et al. Among authors: knight r. Curr Protoc Bioinformatics. 2011 Dec;Chapter 10:10.7.1-10.7.20. doi: 10.1002/0471250953.bi1007s36. Curr Protoc Bioinformatics. 2011. PMID: 22161565 Free PMC article.

5

Advancing analytical algorithms and pipelines for billions of microbial sequences.

Gonzalez A, Knight R. Gonzalez A, et al. Among authors: knight r. Curr Opin Biotechnol. 2012 Feb;23(1):64-71. doi: 10.1016/j.copbio.2011.11.028. Epub 2011 Dec 13. Curr Opin Biotechnol. 2012. PMID: 22172529 Free PMC article. Review.

6

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R. Kuczynski J, et al. Among authors: knight r. Curr Protoc Microbiol. 2012 Nov;Chapter 1:Unit 1E.5.. doi: 10.1002/9780471729259.mc01e05s27. Curr Protoc Microbiol. 2012. PMID: 23184592 Free PMC article.

7

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. Koren O, et al. Among authors: knight r. PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10. PLoS Comput Biol. 2013. PMID: 23326225 Free PMC article.

8

Bacterial diversity in two Neonatal Intensive Care Units (NICUs).

Hewitt KM, Mannino FL, Gonzalez A, Chase JH, Caporaso JG, Knight R, Kelley ST. Hewitt KM, et al. Among authors: knight r. PLoS One. 2013;8(1):e54703. doi: 10.1371/journal.pone.0054703. Epub 2013 Jan 23. PLoS One. 2013. PMID: 23372757 Free PMC article.

9

Meta-analyses of studies of the human microbiota.

Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R. Lozupone CA, et al. Among authors: knight r. Genome Res. 2013 Oct;23(10):1704-14. doi: 10.1101/gr.151803.112. Epub 2013 Jul 16. Genome Res. 2013. PMID: 23861384 Free PMC article.

10

Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon.

Devine AA, Gonzalez A, Speck KE, Knight R, Helmrath M, Lund PK, Azcarate-Peril MA. Devine AA, et al. Among authors: knight r. PLoS One. 2013 Aug 27;8(8):e73140. doi: 10.1371/journal.pone.0073140. eCollection 2013. PLoS One. 2013. PMID: 24015295 Free PMC article.

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