Hlavacek WS - Search Results

1

Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS. Chylek LA, et al. Among authors: hlavacek ws. Wiley Interdiscip Rev Syst Biol Med. 2014 Jan-Feb;6(1):13-36. doi: 10.1002/wsbm.1245. Epub 2013 Sep 30. Wiley Interdiscip Rev Syst Biol Med. 2014. PMID: 24123887 Free PMC article. Review.

2

Rule-based modeling of biochemical systems with BioNetGen.

Faeder JR, Blinov ML, Hlavacek WS. Faeder JR, et al. Among authors: hlavacek ws. Methods Mol Biol. 2009;500:113-67. doi: 10.1007/978-1-59745-525-1_5. Methods Mol Biol. 2009. PMID: 19399430 Free article.

3

Phosphorylation site dynamics of early T-cell receptor signaling.

Chylek LA, Akimov V, Dengjel J, Rigbolt KT, Hu B, Hlavacek WS, Blagoev B. Chylek LA, et al. Among authors: hlavacek ws. PLoS One. 2014 Aug 22;9(8):e104240. doi: 10.1371/journal.pone.0104240. eCollection 2014. PLoS One. 2014. PMID: 25147952 Free PMC article.

4

Modeling biomolecular site dynamics in immunoreceptor signaling systems.

Chylek LA, Wilson BS, Hlavacek WS. Chylek LA, et al. Among authors: hlavacek ws. Adv Exp Med Biol. 2014;844:245-62. doi: 10.1007/978-1-4939-2095-2_12. Adv Exp Med Biol. 2014. PMID: 25480645 Review.

5

Modeling for (physical) biologists: an introduction to the rule-based approach.

Chylek LA, Harris LA, Faeder JR, Hlavacek WS. Chylek LA, et al. Among authors: hlavacek ws. Phys Biol. 2015 Jul 16;12(4):045007. doi: 10.1088/1478-3975/12/4/045007. Phys Biol. 2015. PMID: 26178138 Free PMC article. Review.

6

Mathematical and computational models of immune-receptor signalling.

Goldstein B, Faeder JR, Hlavacek WS. Goldstein B, et al. Among authors: hlavacek ws. Nat Rev Immunol. 2004 Jun;4(6):445-56. doi: 10.1038/nri1374. Nat Rev Immunol. 2004. PMID: 15173833 Review. No abstract available.

7

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.

Blinov ML, Faeder JR, Goldstein B, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Bioinformatics. 2004 Nov 22;20(17):3289-91. doi: 10.1093/bioinformatics/bth378. Epub 2004 Jun 24. Bioinformatics. 2004. PMID: 15217809

8

A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity.

Blinov ML, Faeder JR, Goldstein B, Hlavacek WS. Blinov ML, et al. Among authors: hlavacek ws. Biosystems. 2006 Feb-Mar;83(2-3):136-51. doi: 10.1016/j.biosystems.2005.06.014. Epub 2005 Oct 17. Biosystems. 2006. PMID: 16233948

9

Rules for modeling signal-transduction systems.

Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Hlavacek WS, et al. Sci STKE. 2006 Jul 18;2006(344):re6. doi: 10.1126/stke.3442006re6. Sci STKE. 2006. PMID: 16849649 Review.

10

Kinetic Monte Carlo method for rule-based modeling of biochemical networks.

Yang J, Monine MI, Faeder JR, Hlavacek WS. Yang J, et al. Among authors: hlavacek ws. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):031910. doi: 10.1103/PhysRevE.78.031910. Epub 2008 Sep 10. Phys Rev E Stat Nonlin Soft Matter Phys. 2008. PMID: 18851068 Free PMC article.

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