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High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.
DeMaere MZ, Williams TJ, Allen MA, Brown MV, Gibson JA, Rich J, Lauro FM, Dyall-Smith M, Davenport KW, Woyke T, Kyrpides NC, Tringe SG, Cavicchioli R. DeMaere MZ, et al. Among authors: kyrpides nc. Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16939-44. doi: 10.1073/pnas.1307090110. Epub 2013 Sep 30. Proc Natl Acad Sci U S A. 2013. PMID: 24082106 Free PMC article.
The genomic basis of trophic strategy in marine bacteria.
Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S, DeMaere MZ, Ting L, Ertan H, Johnson J, Ferriera S, Lapidus A, Anderson I, Kyrpides N, Munk AC, Detter C, Han CS, Brown MV, Robb FT, Kjelleberg S, Cavicchioli R. Lauro FM, et al. Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15527-33. doi: 10.1073/pnas.0903507106. Epub 2009 Sep 8. Proc Natl Acad Sci U S A. 2009. PMID: 19805210 Free PMC article.
A call for standardized classification of metagenome projects.
Ivanova N, Tringe SG, Liolios K, Liu WT, Morrison N, Hugenholtz P, Kyrpides NC. Ivanova N, et al. Among authors: kyrpides nc. Environ Microbiol. 2010 Jul;12(7):1803-5. doi: 10.1111/j.1462-2920.2010.02270.x. Environ Microbiol. 2010. PMID: 20653767 Review. No abstract available.
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.
Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Giménez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, Maupin-Furlow JA. Siddaramappa S, et al. BMC Genomics. 2012 May 4;13:165. doi: 10.1186/1471-2164-13-165. BMC Genomics. 2012. PMID: 22559199 Free PMC article.
Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T.
Pester M, Brambilla E, Alazard D, Rattei T, Weinmaier T, Han J, Lucas S, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Ovchinnikova G, Teshima H, Detter JC, Han CS, Tapia R, Land ML, Hauser L, Kyrpides NC, Ivanova NN, Pagani I, Huntmann M, Wei CL, Davenport KW, Daligault H, Chain PS, Chen A, Mavromatis K, Markowitz V, Szeto E, Mikhailova N, Pati A, Wagner M, Woyke T, Ollivier B, Klenk HP, Spring S, Loy A. Pester M, et al. Among authors: kyrpides nc. J Bacteriol. 2012 Nov;194(22):6300-1. doi: 10.1128/JB.01392-12. J Bacteriol. 2012. PMID: 23105050 Free PMC article.
Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).
Kappler U, Davenport K, Beatson S, Lucas S, Lapidus A, Copeland A, Berry KW, Glavina Del Rio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin LA, Han C, Tapia R, Detter JC, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Göker M, Ivanova N, Klenk HP, Woyke T. Kappler U, et al. Among authors: kyrpides nc. Stand Genomic Sci. 2012 Oct 10;7(1):44-58. doi: 10.4056/sigs.3006378. Epub 2012 Sep 26. Stand Genomic Sci. 2012. PMID: 23450099 Free PMC article.
Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T).
Visser M, Worm P, Muyzer G, Pereira IA, Schaap PJ, Plugge CM, Kuever J, Parshina SN, Nazina TN, Ivanova AE, Bernier-Latmani R, Goodwin LA, Kyrpides NC, Woyke T, Chain P, Davenport KW, Spring S, Klenk HP, Stams AJ. Visser M, et al. Among authors: kyrpides nc. Stand Genomic Sci. 2013 Apr 15;8(1):69-87. doi: 10.4056/sigs.3627141. eCollection 2013 Apr 15. Stand Genomic Sci. 2013. PMID: 23961313 Free PMC article.
691 results