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Gene-pair expression signatures reveal lineage control.
Heinäniemi M, Nykter M, Kramer R, Wienecke-Baldacchino A, Sinkkonen L, Zhou JX, Kreisberg R, Kauffman SA, Huang S, Shmulevich I. Heinäniemi M, et al. Among authors: shmulevich i. Nat Methods. 2013 Jun;10(6):577-83. doi: 10.1038/nmeth.2445. Epub 2013 Apr 21. Nat Methods. 2013. PMID: 23603899 Free PMC article.
POMO--Plotting Omics analysis results for Multiple Organisms.
Lin J, Kreisberg R, Kallio A, Dudley AM, Nykter M, Shmulevich I, May P, Autio R. Lin J, et al. Among authors: shmulevich i. BMC Genomics. 2013 Dec 24;14:918. doi: 10.1186/1471-2164-14-918. BMC Genomics. 2013. PMID: 24365393 Free PMC article.
Gene expression dynamics in the macrophage exhibit criticality.
Nykter M, Price ND, Aldana M, Ramsey SA, Kauffman SA, Hood LE, Yli-Harja O, Shmulevich I. Nykter M, et al. Among authors: shmulevich i. Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1897-900. doi: 10.1073/pnas.0711525105. Epub 2008 Feb 4. Proc Natl Acad Sci U S A. 2008. PMID: 18250330 Free PMC article.
The Cancer Genome Atlas Pan-Cancer analysis project.
Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Among authors: shmulevich i. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.
Quantitative analysis of colony morphology in yeast.
Ruusuvuori P, Lin J, Scott AC, Tan Z, Sorsa S, Kallio A, Nykter M, Yli-Harja O, Shmulevich I, Dudley AM. Ruusuvuori P, et al. Among authors: shmulevich i. Biotechniques. 2014 Jan;56(1):18-27. doi: 10.2144/000114123. Biotechniques. 2014. PMID: 24447135 Free PMC article.
Activities and sensitivities in boolean network models.
Shmulevich I, Kauffman SA. Shmulevich I, et al. Phys Rev Lett. 2004 Jul 23;93(4):048701. doi: 10.1103/PhysRevLett.93.048701. Epub 2004 Jul 22. Phys Rev Lett. 2004. PMID: 15323803 Free PMC article.
243 results