Olson WK - Search Results

1

Interplay of protein and DNA structure revealed in simulations of the lac operon.

Czapla L, Grosner MA, Swigon D, Olson WK. Czapla L, et al. Among authors: olson wk. PLoS One. 2013;8(2):e56548. doi: 10.1371/journal.pone.0056548. Epub 2013 Feb 14. PLoS One. 2013. PMID: 23457581 Free PMC article.

2

Computer simulation of protein-induced structural changes in closed circular DNA.

Zhang P, Tobias I, Olson WK. Zhang P, et al. Among authors: olson wk. J Mol Biol. 1994 Sep 23;242(3):271-90. doi: 10.1006/jmbi.1994.1578. J Mol Biol. 1994. PMID: 8089847

3

Simulating DNA at low resolution.

Olson WK. Olson WK. Curr Opin Struct Biol. 1996 Apr;6(2):242-56. doi: 10.1016/s0959-440x(96)80082-0. Curr Opin Struct Biol. 1996. PMID: 8728659 Review.

4

DNA stretching and compression: large-scale simulations of double helical structures.

Kosikov KM, Gorin AA, Zhurkin VB, Olson WK. Kosikov KM, et al. Among authors: olson wk. J Mol Biol. 1999 Jun 25;289(5):1301-26. doi: 10.1006/jmbi.1999.2798. J Mol Biol. 1999. PMID: 10373369

5

Modeling DNA deformations.

Olson WK, Zhurkin VB. Olson WK, et al. Curr Opin Struct Biol. 2000 Jun;10(3):286-97. doi: 10.1016/s0959-440x(00)00086-5. Curr Opin Struct Biol. 2000. PMID: 10851199

6

Implications of the dependence of the elastic properties of DNA on nucleotide sequence.

Olson WK, Swigon D, Coleman BD. Olson WK, et al. Philos Trans A Math Phys Eng Sci. 2004 Jul 15;362(1820):1403-22. doi: 10.1098/rsta.2004.1380. Philos Trans A Math Phys Eng Sci. 2004. PMID: 15306458

7

Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation.

Swigon D, Coleman BD, Olson WK. Swigon D, et al. Among authors: olson wk. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9879-84. doi: 10.1073/pnas.0603557103. Epub 2006 Jun 19. Proc Natl Acad Sci U S A. 2006. PMID: 16785444 Free PMC article.

8

Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations.

Czapla L, Swigon D, Olson WK. Czapla L, et al. Among authors: olson wk. J Mol Biol. 2008 Oct 3;382(2):353-70. doi: 10.1016/j.jmb.2008.05.088. Epub 2008 Jun 19. J Mol Biol. 2008. PMID: 18586040 Free PMC article.

9

DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Balasubramanian S, Xu F, Olson WK. Balasubramanian S, et al. Among authors: olson wk. Biophys J. 2009 Mar 18;96(6):2245-60. doi: 10.1016/j.bpj.2008.11.040. Biophys J. 2009. PMID: 19289051 Free PMC article.

10

How stiff is DNA?

Zheng G, Czapla L, Srinivasan AR, Olson WK. Zheng G, et al. Among authors: olson wk. Phys Chem Chem Phys. 2010 Feb 14;12(6):1399-406. doi: 10.1039/b916183j. Epub 2009 Dec 23. Phys Chem Chem Phys. 2010. PMID: 20119618 Free PMC article.

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