Schwikowski B - Search Results

1

Identification of additional proteins in differential proteomics using protein interaction networks.

Gwinner F, Acosta-Martin AE, Boytard L, Chwastyniak M, Beseme O, Drobecq H, Duban-Deweer S, Juthier F, Jude B, Amouyel P, Pinet F, Schwikowski B. Gwinner F, et al. Among authors: schwikowski b. Proteomics. 2013 Apr;13(7):1065-76. doi: 10.1002/pmic.201200482. Proteomics. 2013. PMID: 23386401 Free PMC article.

2

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data.

Zhang N, Aebersold R, Schwikowski B. Zhang N, et al. Among authors: schwikowski b. Proteomics. 2002 Oct;2(10):1406-12. doi: 10.1002/1615-9861(200210)2:10<1406::AID-PROT1406>3.0.CO;2-9. Proteomics. 2002. PMID: 12422357

3

Alignment of LC-MS images, with applications to biomarker discovery and protein identification.

Vandenbogaert M, Li-Thiao-Té S, Kaltenbach HM, Zhang R, Aittokallio T, Schwikowski B. Vandenbogaert M, et al. Among authors: schwikowski b. Proteomics. 2008 Feb;8(4):650-72. doi: 10.1002/pmic.200700791. Proteomics. 2008. PMID: 18297649 Review.

4

Fragmentation-free LC-MS can identify hundreds of proteins.

Bochet P, Rügheimer F, Guina T, Brooks P, Goodlett D, Clote P, Schwikowski B. Bochet P, et al. Among authors: schwikowski b. Proteomics. 2011 Jan;11(1):22-32. doi: 10.1002/pmic.200900765. Epub 2010 Dec 6. Proteomics. 2011. PMID: 21182191

5

Bacterial Internalization, Localization, and Effectors Shape the Epithelial Immune Response during Shigella flexneri Infection.

Lippmann J, Gwinner F, Rey C, Tamir U, Law HK, Schwikowski B, Enninga J. Lippmann J, et al. Among authors: schwikowski b. Infect Immun. 2015 Sep;83(9):3624-37. doi: 10.1128/IAI.00574-15. Epub 2015 Jun 29. Infect Immun. 2015. PMID: 26123804 Free PMC article.

6

Network-based analysis of omics data: the LEAN method.

Gwinner F, Boulday G, Vandiedonck C, Arnould M, Cardoso C, Nikolayeva I, Guitart-Pla O, Denis CV, Christophe OD, Beghain J, Tournier-Lasserve E, Schwikowski B. Gwinner F, et al. Among authors: schwikowski b. Bioinformatics. 2017 Mar 1;33(5):701-709. doi: 10.1093/bioinformatics/btw676. Bioinformatics. 2017. PMID: 27797778 Free PMC article.

7

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer.

Zhang N, Li XJ, Ye M, Pan S, Schwikowski B, Aebersold R. Zhang N, et al. Among authors: schwikowski b. Proteomics. 2005 Nov;5(16):4096-106. doi: 10.1002/pmic.200401260. Proteomics. 2005. PMID: 16196091

8

Graph-based methods for analysing networks in cell biology.

Aittokallio T, Schwikowski B. Aittokallio T, et al. Among authors: schwikowski b. Brief Bioinform. 2006 Sep;7(3):243-55. doi: 10.1093/bib/bbl022. Epub 2006 Jul 30. Brief Bioinform. 2006. PMID: 16880171 Review.

9

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: schwikowski b. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.

10

Automated phosphopeptide identification using multiple MS/MS fragmentation modes.

Vandenbogaert M, Hourdel V, Jardin-Mathé O, Bigeard J, Bonhomme L, Legros V, Hirt H, Schwikowski B, Pflieger D. Vandenbogaert M, et al. Among authors: schwikowski b. J Proteome Res. 2012 Dec 7;11(12):5695-703. doi: 10.1021/pr300507j. Epub 2012 Nov 7. J Proteome Res. 2012. PMID: 23094866

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