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Interlaboratory studies and initiatives developing standards for proteomics.
Ivanov AR, Colangelo CM, Dufresne CP, Friedman DB, Lilley KS, Mechtler K, Phinney BS, Rose KL, Rudnick PA, Searle BC, Shaffer SA, Weintraub ST. Ivanov AR, et al. Among authors: shaffer sa. Proteomics. 2013 Mar;13(6):904-9. doi: 10.1002/pmic.201200532. Epub 2013 Feb 19. Proteomics. 2013. PMID: 23319436 Free PMC article.
Proteomics on Fixed Tissue Specimens - A Review.
Reimel BA, Pan S, May DH, Shaffer SA, Goodlett DR, McIntosh MW, Yerian LM, Bronner MP, Chen R, Brentnall TA. Reimel BA, et al. Among authors: shaffer sa. Curr Proteomics. 2009 Apr 1;6(1):63-69. doi: 10.2174/157016409787847420. Curr Proteomics. 2009. PMID: 19829741 Free PMC article.
Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.
Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B. Prakash A, et al. Among authors: shaffer sa. Mol Cell Proteomics. 2007 Oct;6(10):1741-8. doi: 10.1074/mcp.M600470-MCP200. Epub 2007 Jul 7. Mol Cell Proteomics. 2007. PMID: 17617667 Free article.
Precursor ion independent algorithm for top-down shotgun proteomics.
Tsai YS, Scherl A, Shaw JL, MacKay CL, Shaffer SA, Langridge-Smith PR, Goodlett DR. Tsai YS, et al. Among authors: shaffer sa. J Am Soc Mass Spectrom. 2009 Nov;20(11):2154-66. doi: 10.1016/j.jasms.2009.07.024. Epub 2009 Aug 13. J Am Soc Mass Spectrom. 2009. PMID: 19773183 Free article.
Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.
Jones KA, Kim PD, Patel BB, Kelsen SG, Braverman A, Swinton DJ, Gafken PR, Jones LA, Lane WS, Neveu JM, Leung HE, Shaffer SA, Leszyk JD, Stanley BA, Fox TE, Stanley A, Hall MJ, Hampel H, South CD, de la Chapelle A, Burt RW, Jones DA, Kopelovich L, Yeung AT. Jones KA, et al. Among authors: shaffer sa. J Proteome Res. 2013 Oct 4;12(10):4351-65. doi: 10.1021/pr400307u. Epub 2013 Sep 19. J Proteome Res. 2013. PMID: 24004147 Free PMC article.
162 results