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Unique reporter-based sensor platforms to monitor signalling in cells.
PLoS One. 2012;7(11):e50521. doi: 10.1371/journal.pone.0050521. Epub 2012 Nov 29.
PLoS One. 2012.
PMID: 23209767
Free PMC article.
The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects.
Kamola PJ, Nakano Y, Takahashi T, Wilson PA, Ui-Tei K.
Kamola PJ, et al.
PLoS Comput Biol. 2015 Dec 11;11(12):e1004656. doi: 10.1371/journal.pcbi.1004656. eCollection 2015 Dec.
PLoS Comput Biol. 2015.
PMID: 26657993
Free PMC article.
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In silico and in vitro evaluation of exonic and intronic off-target effects form a critical element of therapeutic ASO gapmer optimization.
Kamola PJ, Kitson JD, Turner G, Maratou K, Eriksson S, Panjwani A, Warnock LC, Douillard Guilloux GA, Moores K, Koppe EL, Wixted WE, Wilson PA, Gooderham NJ, Gant TW, Clark KL, Hughes SA, Edbrooke MR, Parry JD.
Kamola PJ, et al.
Nucleic Acids Res. 2015 Oct 15;43(18):8638-50. doi: 10.1093/nar/gkv857. Epub 2015 Sep 3.
Nucleic Acids Res. 2015.
PMID: 26338776
Free PMC article.
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Strategies for In Vivo Screening and Mitigation of Hepatotoxicity Associated with Antisense Drugs.
Kamola PJ, Maratou K, Wilson PA, Rush K, Mullaney T, McKevitt T, Evans P, Ridings J, Chowdhury P, Roulois A, Fairchild A, McCawley S, Cartwright K, Gooderham NJ, Gant TW, Moores K, Hughes SA, Edbrooke MR, Clark K, Parry JD.
Kamola PJ, et al.
Mol Ther Nucleic Acids. 2017 Sep 15;8:383-394. doi: 10.1016/j.omtn.2017.07.003. Epub 2017 Jul 8.
Mol Ther Nucleic Acids. 2017.
PMID: 28918038
Free PMC article.
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Understanding Treatment Response in Individual Profiles of Men with Prostatic Enlargement at Risk of Progression.
Gravas S, Palacios-Moreno JM, Thompson D, Concas F, Kamola PJ, Roehrborn CG, Oelke M, Kattan MW, Averbeck MA, Manyak M, Cortés V, Lulic Z.
Gravas S, et al. Among authors: kamola pj.
Eur Urol Focus. 2023 Jan;9(1):178-187. doi: 10.1016/j.euf.2022.07.004. Epub 2022 Aug 18.
Eur Urol Focus. 2023.
PMID: 35985933
Free article.
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Assessment of network module identification across complex diseases.
Choobdar S, Ahsen ME, Crawford J, Tomasoni M, Fang T, Lamparter D, Lin J, Hescott B, Hu X, Mercer J, Natoli T, Narayan R; DREAM Module Identification Challenge Consortium; Subramanian A, Zhang JD, Stolovitzky G, Kutalik Z, Lage K, Slonim DK, Saez-Rodriguez J, Cowen LJ, Bergmann S, Marbach D.
Choobdar S, et al.
Nat Methods. 2019 Sep;16(9):843-852. doi: 10.1038/s41592-019-0509-5. Epub 2019 Aug 30.
Nat Methods. 2019.
PMID: 31471613
Free PMC article.
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.
Menden MP, et al.
Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2.
Nat Commun. 2019.
PMID: 31209238
Free PMC article.
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2D-EM clustering approach for high-dimensional data through folding feature vectors.
Sharma A, Kamola PJ, Tsunoda T.
Sharma A, et al. Among authors: kamola pj.
BMC Bioinformatics. 2017 Dec 28;18(Suppl 16):547. doi: 10.1186/s12859-017-1970-8.
BMC Bioinformatics. 2017.
PMID: 29297298
Free PMC article.
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