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Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray.
Fernandez P, Soria M, Blesa D, DiRienzo J, Moschen S, Rivarola M, Clavijo BJ, Gonzalez S, Peluffo L, Príncipi D, Dosio G, Aguirrezabal L, García-García F, Conesa A, Hopp E, Dopazo J, Heinz RA, Paniego N. Fernandez P, et al. Among authors: conesa a. PLoS One. 2012;7(10):e45899. doi: 10.1371/journal.pone.0045899. Epub 2012 Oct 26. PLoS One. 2012. PMID: 23110046 Free PMC article.
Differential expression in RNA-seq: a matter of depth.
Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A. Tarazona S, et al. Among authors: conesa a. Genome Res. 2011 Dec;21(12):2213-23. doi: 10.1101/gr.124321.111. Epub 2011 Sep 8. Genome Res. 2011. PMID: 21903743 Free PMC article.
Functional assessment of time course microarray data.
Nueda MJ, Sebastián P, Tarazona S, García-García F, Dopazo J, Ferrer A, Conesa A. Nueda MJ, et al. Among authors: conesa a. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S9. doi: 10.1186/1471-2105-10-S6-S9. BMC Bioinformatics. 2009. PMID: 19534758 Free PMC article.
GEPAS, a web-based tool for microarray data analysis and interpretation.
Tárraga J, Medina I, Carbonell J, Huerta-Cepas J, Minguez P, Alloza E, Al-Shahrour F, Vegas-Azcárate S, Goetz S, Escobar P, Garcia-Garcia F, Conesa A, Montaner D, Dopazo J. Tárraga J, et al. Among authors: conesa a. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W308-14. doi: 10.1093/nar/gkn303. Epub 2008 May 28. Nucleic Acids Res. 2008. PMID: 18508806 Free PMC article.
High-throughput functional annotation and data mining with the Blast2GO suite.
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. Götz S, et al. Among authors: conesa a. Nucleic Acids Res. 2008 Jun;36(10):3420-35. doi: 10.1093/nar/gkn176. Epub 2008 Apr 29. Nucleic Acids Res. 2008. PMID: 18445632 Free PMC article.
239 results