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Probabilistic arithmetic automata and their applications.
Marschall T, Herms I, Kaltenbach HM, Rahmann S. Marschall T, et al. Among authors: rahmann s. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1737-50. doi: 10.1109/TCBB.2012.109. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22868683
Efficient exact motif discovery.
Marschall T, Rahmann S. Marschall T, et al. Among authors: rahmann s. Bioinformatics. 2009 Jun 15;25(12):i356-64. doi: 10.1093/bioinformatics/btp188. Bioinformatics. 2009. PMID: 19478010 Free PMC article.
Discovering motifs that induce sequencing errors.
Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T. Allhoff M, et al. Among authors: rahmann s. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S1. doi: 10.1186/1471-2105-14-S5-S1. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23735080 Free PMC article.
Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma.
Schramm A, Köster J, Marschall T, Martin M, Schwermer M, Fielitz K, Büchel G, Barann M, Esser D, Rosenstiel P, Rahmann S, Eggert A, Schulte JH. Schramm A, et al. Among authors: rahmann s. Int J Cancer. 2013 Feb 1;132(3):E106-15. doi: 10.1002/ijc.27787. Epub 2012 Sep 26. Int J Cancer. 2013. PMID: 22907398 Free article.
Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome.
Schramm A, Schowe B, Fielitz K, Heilmann M, Martin M, Marschall T, Köster J, Vandesompele J, Vermeulen J, de Preter K, Koster J, Versteeg R, Noguera R, Speleman F, Rahmann S, Eggert A, Morik K, Schulte JH. Schramm A, et al. Among authors: rahmann s. Br J Cancer. 2012 Oct 9;107(8):1409-17. doi: 10.1038/bjc.2012.391. Br J Cancer. 2012. PMID: 23047593 Free PMC article.
SimLoRD: Simulation of Long Read Data.
Stöcker BK, Köster J, Rahmann S. Stöcker BK, et al. Among authors: rahmann s. Bioinformatics. 2016 Sep 1;32(17):2704-6. doi: 10.1093/bioinformatics/btw286. Epub 2016 May 10. Bioinformatics. 2016. PMID: 27166244
102 results