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Probabilistic arithmetic automata and their applications.
Marschall T, Herms I, Kaltenbach HM, Rahmann S. Marschall T, et al. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1737-50. doi: 10.1109/TCBB.2012.109. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22868683
Efficient exact motif discovery.
Marschall T, Rahmann S. Marschall T, et al. Bioinformatics. 2009 Jun 15;25(12):i356-64. doi: 10.1093/bioinformatics/btp188. Bioinformatics. 2009. PMID: 19478010 Free PMC article.
Discovering motifs that induce sequencing errors.
Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T. Allhoff M, et al. Among authors: marschall t. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S1. doi: 10.1186/1471-2105-14-S5-S1. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23735080 Free PMC article.
Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma.
Schramm A, Köster J, Marschall T, Martin M, Schwermer M, Fielitz K, Büchel G, Barann M, Esser D, Rosenstiel P, Rahmann S, Eggert A, Schulte JH. Schramm A, et al. Among authors: marschall t. Int J Cancer. 2013 Feb 1;132(3):E106-15. doi: 10.1002/ijc.27787. Epub 2012 Sep 26. Int J Cancer. 2013. PMID: 22907398 Free article.
Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome.
Schramm A, Schowe B, Fielitz K, Heilmann M, Martin M, Marschall T, Köster J, Vandesompele J, Vermeulen J, de Preter K, Koster J, Versteeg R, Noguera R, Speleman F, Rahmann S, Eggert A, Morik K, Schulte JH. Schramm A, et al. Among authors: marschall t. Br J Cancer. 2012 Oct 9;107(8):1409-17. doi: 10.1038/bjc.2012.391. Br J Cancer. 2012. PMID: 23047593 Free PMC article.
CLEVER: clique-enumerating variant finder.
Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A. Marschall T, et al. Bioinformatics. 2012 Nov 15;28(22):2875-82. doi: 10.1093/bioinformatics/bts566. Epub 2012 Oct 11. Bioinformatics. 2012. PMID: 23060616
Viral quasispecies assembly via maximal clique enumeration.
Töpfer A, Marschall T, Bull RA, Luciani F, Schönhuth A, Beerenwinkel N. Töpfer A, et al. Among authors: marschall t. PLoS Comput Biol. 2014 Mar 27;10(3):e1003515. doi: 10.1371/journal.pcbi.1003515. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675810 Free PMC article.
131 results