Adamiak RW - Search Results

1

Automated 3D structure composition for large RNAs.

Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26. Nucleic Acids Res. 2012. PMID: 22539264 Free PMC article.

2

The molecular dynamics thermocycler. A new approach to sample conformational space, as exemplified by the RNA hairpin.

Bielecki L, Popenda M, Adamiak RW. Bielecki L, et al. Among authors: adamiak rw. Nucleic Acids Res Suppl. 2002;(2):57-8. doi: 10.1093/nass/2.1.57. Nucleic Acids Res Suppl. 2002. PMID: 12903103

3

High salt solution structure of a left-handed RNA double helix.

Popenda M, Milecki J, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. Nucleic Acids Res. 2004 Aug 3;32(13):4044-54. doi: 10.1093/nar/gkh736. Print 2004. Nucleic Acids Res. 2004. PMID: 15292450 Free PMC article.

4

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5' end of the HIV-2 leader RNA.

Pachulska-Wieczorek K, Purzycka KJ, Adamiak RW. Pachulska-Wieczorek K, et al. Among authors: adamiak rw. Nucleic Acids Res. 2006 May 31;34(10):2984-97. doi: 10.1093/nar/gkl373. Print 2006. Nucleic Acids Res. 2006. PMID: 16738137 Free PMC article.

5

High-throughput method for the prediction of low-resolution, three-dimensional RNA structures.

Popenda M, Bielecki L, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. Nucleic Acids Symp Ser (Oxf). 2006;(50):67-8. doi: 10.1093/nass/nrl033. Nucleic Acids Symp Ser (Oxf). 2006. PMID: 17150820

6

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.

Popenda M, Blazewicz M, Szachniuk M, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. Nucleic Acids Res. 2008 Jan;36(Database issue):D386-91. doi: 10.1093/nar/gkm786. Epub 2007 Oct 5. Nucleic Acids Res. 2008. PMID: 17921499 Free PMC article.

7

The HIV-2 TAR RNA domain as a potential source of viral-encoded miRNA. A reconnaissance study.

Purzycka KJ, Adamiak RW. Purzycka KJ, et al. Among authors: adamiak rw. Nucleic Acids Symp Ser (Oxf). 2008;(52):511-2. doi: 10.1093/nass/nrn259. Nucleic Acids Symp Ser (Oxf). 2008. PMID: 18776478

8

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Popenda M, Szachniuk M, Blazewicz M, Wasik S, Burke EK, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. BMC Bioinformatics. 2010 May 6;11:231. doi: 10.1186/1471-2105-11-231. BMC Bioinformatics. 2010. PMID: 20459631 Free PMC article.

9

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA.

Purzycka KJ, Pachulska-Wieczorek K, Adamiak RW. Purzycka KJ, et al. Among authors: adamiak rw. Nucleic Acids Res. 2011 Sep 1;39(16):7234-48. doi: 10.1093/nar/gkr385. Epub 2011 May 26. Nucleic Acids Res. 2011. PMID: 21622659 Free PMC article.

10

RNAlyzer--novel approach for quality analysis of RNA structural models.

Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J. Lukasiak P, et al. Among authors: adamiak rw. Nucleic Acids Res. 2013 Jul;41(12):5978-90. doi: 10.1093/nar/gkt318. Epub 2013 Apr 25. Nucleic Acids Res. 2013. PMID: 23620294 Free PMC article.

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