Yandell M - Search Results

1

A beginner's guide to eukaryotic genome annotation.

Yandell M, Ence D. Yandell M, et al. Nat Rev Genet. 2012 Apr 18;13(5):329-42. doi: 10.1038/nrg3174. Nat Rev Genet. 2012. PMID: 22510764 Review.

2

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M. Cantarel BL, et al. Among authors: yandell m. Genome Res. 2008 Jan;18(1):188-96. doi: 10.1101/gr.6743907. Epub 2007 Nov 19. Genome Res. 2008. PMID: 18025269 Free PMC article.

3

Quantitative measures for the management and comparison of annotated genomes.

Eilbeck K, Moore B, Holt C, Yandell M. Eilbeck K, et al. Among authors: yandell m. BMC Bioinformatics. 2009 Feb 23;10:67. doi: 10.1186/1471-2105-10-67. BMC Bioinformatics. 2009. PMID: 19236712 Free PMC article.

4

Characterization of the Conus bullatus genome and its venom-duct transcriptome.

Hu H, Bandyopadhyay PK, Olivera BM, Yandell M. Hu H, et al. Among authors: yandell m. BMC Genomics. 2011 Jan 25;12:60. doi: 10.1186/1471-2164-12-60. BMC Genomics. 2011. PMID: 21266071 Free PMC article.

5

Global analysis of disease-related DNA sequence variation in 10 healthy individuals: implications for whole genome-based clinical diagnostics.

Moore B, Hu H, Singleton M, De La Vega FM, Reese MG, Yandell M. Moore B, et al. Among authors: yandell m. Genet Med. 2011 Mar;13(3):210-7. doi: 10.1097/GIM.0b013e31820ed321. Genet Med. 2011. PMID: 21325948 Free PMC article.

6

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.

Holt C, Yandell M. Holt C, et al. Among authors: yandell m. BMC Bioinformatics. 2011 Dec 22;12:491. doi: 10.1186/1471-2105-12-491. BMC Bioinformatics. 2011. PMID: 22192575 Free PMC article.

7

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.

Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, Yandell M. Campbell MS, et al. Among authors: yandell m. Plant Physiol. 2014 Feb;164(2):513-24. doi: 10.1104/pp.113.230144. Epub 2013 Dec 4. Plant Physiol. 2014. PMID: 24306534 Free PMC article.

8

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M. Law M, et al. Among authors: yandell m. Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10. Plant Physiol. 2015. PMID: 25384563 Free PMC article.

9

Genome Annotation and Curation Using MAKER and MAKER-P.

Campbell MS, Holt C, Moore B, Yandell M. Campbell MS, et al. Among authors: yandell m. Curr Protoc Bioinformatics. 2014 Dec 12;48:4.11.1-4.11.39. doi: 10.1002/0471250953.bi0411s48. Curr Protoc Bioinformatics. 2014. PMID: 25501943 Free PMC article.

10

Transposable element islands facilitate adaptation to novel environments in an invasive species.

Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, Weichselgartner T, Kemena C, Stökl J, Schultner E, Wurm Y, Smith CD, Yandell M, Heinze J, Gadau J, Oettler J. Schrader L, et al. Among authors: yandell m. Nat Commun. 2014 Dec 16;5:5495. doi: 10.1038/ncomms6495. Nat Commun. 2014. PMID: 25510865 Free PMC article.

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