Kono H - Search Results

1

Rational design of DNA sequence-specific zinc fingers.

Kono H, Imanishi M, Negi S, Tatsutani K, Sakaeda Y, Hashimoto A, Nakayama C, Futaki S, Sugiura Y. Kono H, et al. FEBS Lett. 2012 Mar 23;586(6):918-23. doi: 10.1016/j.febslet.2012.02.025. Epub 2012 Feb 23. FEBS Lett. 2012. PMID: 22449981 Free article.

2

Combinatorial protein design strategies using computational methods.

Kono H, Wang W, Saven JG. Kono H, et al. Methods Mol Biol. 2007;352:3-22. doi: 10.1385/1-59745-187-8:3. Methods Mol Biol. 2007. PMID: 17041256

3

Sequence dependencies of DNA deformability and hydration in the minor groove.

Yonetani Y, Kono H. Yonetani Y, et al. Among authors: kono h. Biophys J. 2009 Aug 19;97(4):1138-47. doi: 10.1016/j.bpj.2009.05.049. Biophys J. 2009. PMID: 19686662 Free PMC article.

4

A generalized conformational energy function of DNA derived from molecular dynamics simulations.

Yamasaki S, Terada T, Shimizu K, Kono H, Sarai A. Yamasaki S, et al. Among authors: kono h. Nucleic Acids Res. 2009 Nov;37(20):e135. doi: 10.1093/nar/gkp718. Epub 2009 Sep 3. Nucleic Acids Res. 2009. PMID: 19729512 Free PMC article.

5

Local conformational changes in the DNA interfaces of proteins.

Sunami T, Kono H. Sunami T, et al. Among authors: kono h. PLoS One. 2013;8(2):e56080. doi: 10.1371/journal.pone.0056080. Epub 2013 Feb 13. PLoS One. 2013. PMID: 23418514 Free PMC article.

6

Dissociation free-energy profiles of specific and nonspecific DNA-protein complexes.

Yonetani Y, Kono H. Yonetani Y, et al. Among authors: kono h. J Phys Chem B. 2013 Jun 27;117(25):7535-45. doi: 10.1021/jp402664w. Epub 2013 Jun 11. J Phys Chem B. 2013. PMID: 23713479

7

Anatomy of specific interactions between lambda repressor and operator DNA.

Oobatake M, Kono H, Wang Y, Sarai A. Oobatake M, et al. Among authors: kono h. Proteins. 2003 Oct 1;53(1):33-43. doi: 10.1002/prot.10438. Proteins. 2003. PMID: 12945047

8

Protein-DNA recognition patterns and predictions.

Sarai A, Kono H. Sarai A, et al. Among authors: kono h. Annu Rev Biophys Biomol Struct. 2005;34:379-98. doi: 10.1146/annurev.biophys.34.040204.144537. Annu Rev Biophys Biomol Struct. 2005. PMID: 15869395 Review.

9

Role of inter and intramolecular interactions in protein-DNA recognition.

Gromiha MM, Siebers JG, Selvaraj S, Kono H, Sarai A. Gromiha MM, et al. Among authors: kono h. Gene. 2005 Dec 30;364:108-13. doi: 10.1016/j.gene.2005.07.022. Epub 2005 Oct 24. Gene. 2005. PMID: 16249059

10

Sequence-dependent conformational energy of DNA derived from molecular dynamics simulations: toward understanding the indirect readout mechanism in protein-DNA recognition.

Araúzo-Bravo MJ, Fujii S, Kono H, Ahmad S, Sarai A. Araúzo-Bravo MJ, et al. Among authors: kono h. J Am Chem Soc. 2005 Nov 23;127(46):16074-89. doi: 10.1021/ja053241l. J Am Chem Soc. 2005. PMID: 16287294

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