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Sizing up allometric scaling theory.
Savage VM, Deeds EJ, Fontana W. Savage VM, et al. Among authors: fontana w. PLoS Comput Biol. 2008 Sep 12;4(9):e1000171. doi: 10.1371/journal.pcbi.1000171. PLoS Comput Biol. 2008. PMID: 18787686 Free PMC article.
Internal coarse-graining of molecular systems.
Feret J, Danos V, Krivine J, Harmer R, Fontana W. Feret J, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6453-8. doi: 10.1073/pnas.0809908106. Epub 2009 Apr 3. Proc Natl Acad Sci U S A. 2009. PMID: 19346467 Free PMC article.
Curvature in metabolic scaling.
Kolokotrones T, Van Savage, Deeds EJ, Fontana W. Kolokotrones T, et al. Among authors: fontana w. Nature. 2010 Apr 1;464(7289):753-6. doi: 10.1038/nature08920. Nature. 2010. PMID: 20360740
Curvature in metabolic scaling: a reply to MacKay.
Deeds EJ, Savage V, Fontana W. Deeds EJ, et al. Among authors: fontana w. J Theor Biol. 2011 Jul 7;280(1):197-8. doi: 10.1016/j.jtbi.2011.03.036. Epub 2011 Apr 9. J Theor Biol. 2011. PMID: 21497609 No abstract available.
Optimizing ring assembly reveals the strength of weak interactions.
Deeds EJ, Bachman JA, Fontana W. Deeds EJ, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2348-53. doi: 10.1073/pnas.1113095109. Epub 2012 Jan 30. Proc Natl Acad Sci U S A. 2012. PMID: 22308356 Free PMC article.
Crosstalk and competition in signaling networks.
Rowland MA, Fontana W, Deeds EJ. Rowland MA, et al. Among authors: fontana w. Biophys J. 2012 Dec 5;103(11):2389-98. doi: 10.1016/j.bpj.2012.10.006. Biophys J. 2012. PMID: 23283238 Free PMC article.
Dynamic Influence Networks for Rule-Based Models.
Forbes AG, Burks A, Lee K, Li X, Boutillier P, Krivine J, Fontana W. Forbes AG, et al. Among authors: fontana w. IEEE Trans Vis Comput Graph. 2018 Jan;24(1):184-194. doi: 10.1109/TVCG.2017.2745280. Epub 2017 Aug 29. IEEE Trans Vis Comput Graph. 2018. PMID: 28866584
The Kappa platform for rule-based modeling.
Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W. Boutillier P, et al. Among authors: fontana w. Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272. Bioinformatics. 2018. PMID: 29950016 Free PMC article.
50 results