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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E. Cruz JA, et al. Among authors: santalucia j. RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23. RNA. 2012. PMID: 22361291 Free PMC article.
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B 2nd, Xiao Y, Xu X, Zhang D, Zok T, Westhof E. Miao Z, et al. Among authors: santalucia j jr. RNA. 2017 May;23(5):655-672. doi: 10.1261/rna.060368.116. Epub 2017 Jan 30. RNA. 2017. PMID: 28138060 Free PMC article.
Solution structure of RNase P RNA.
Kazantsev AV, Rambo RP, Karimpour S, Santalucia J Jr, Tainer JA, Pace NR. Kazantsev AV, et al. Among authors: santalucia j jr. RNA. 2011 Jun;17(6):1159-71. doi: 10.1261/rna.2563511. Epub 2011 Apr 29. RNA. 2011. PMID: 21531920 Free PMC article.
Hachimoji DNA and RNA: A genetic system with eight building blocks.
Hoshika S, Leal NA, Kim MJ, Kim MS, Karalkar NB, Kim HJ, Bates AM, Watkins NE Jr, SantaLucia HA, Meyer AJ, DasGupta S, Piccirilli JA, Ellington AD, SantaLucia J Jr, Georgiadis MM, Benner SA. Hoshika S, et al. Among authors: santalucia j jr. Science. 2019 Feb 22;363(6429):884-887. doi: 10.1126/science.aat0971. Science. 2019. PMID: 30792304 Free PMC article.
The biophysics of RNA.
Bevilacqua PC, SantaLucia J Jr. Bevilacqua PC, et al. Among authors: santalucia j jr. ACS Chem Biol. 2007 Jul 20;2(7):440-4. doi: 10.1021/cb7001363. ACS Chem Biol. 2007. PMID: 17649965 No abstract available.
The thermodynamics of DNA structural motifs.
SantaLucia J Jr, Hicks D. SantaLucia J Jr, et al. Annu Rev Biophys Biomol Struct. 2004;33:415-40. doi: 10.1146/annurev.biophys.32.110601.141800. Annu Rev Biophys Biomol Struct. 2004. PMID: 15139820 Review.
52 results