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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E. Cruz JA, et al. Among authors: dokholyan nv. RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23. RNA. 2012. PMID: 22361291 Free PMC article.
Topological determinants of protein folding.
Dokholyan NV, Li L, Ding F, Shakhnovich EI. Dokholyan NV, et al. Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8637-41. doi: 10.1073/pnas.122076099. Proc Natl Acad Sci U S A. 2002. PMID: 12084924 Free PMC article.
Scaling behavior and structure of denatured proteins.
Ding F, Jha RK, Dokholyan NV. Ding F, et al. Among authors: dokholyan nv. Structure. 2005 Jul;13(7):1047-54. doi: 10.1016/j.str.2005.04.009. Structure. 2005. PMID: 16004876 Free article.
Simple but predictive protein models.
Ding F, Dokholyan NV. Ding F, et al. Among authors: dokholyan nv. Trends Biotechnol. 2005 Sep;23(9):450-5. doi: 10.1016/j.tibtech.2005.07.001. Trends Biotechnol. 2005. PMID: 16038997
Topological determinants of protein domain swapping.
Ding F, Prutzman KC, Campbell SL, Dokholyan NV. Ding F, et al. Among authors: dokholyan nv. Structure. 2006 Jan;14(1):5-14. doi: 10.1016/j.str.2005.09.008. Structure. 2006. PMID: 16407060 Free article.
Emergence of protein fold families through rational design.
Ding F, Dokholyan NV. Ding F, et al. Among authors: dokholyan nv. PLoS Comput Biol. 2006 Jul 7;2(7):e85. doi: 10.1371/journal.pcbi.0020085. Epub 2006 May 26. PLoS Comput Biol. 2006. PMID: 16839198 Free PMC article.
328 results