Pascual-Montano A - Search Results

1

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Rebholz-Schuhmann D, Jimeno Yepes A, Li C, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila JB, Baker CJ, Kuo CJ, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong LI, Rautschka M, Neves ML, Pascual-Montano A, Wei Q, Collier N, Chowdhury MF, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina JL, van Mulligen E, Kors J, Hahn U. Rebholz-Schuhmann D, et al. J Biomed Semantics. 2011 Oct 6;2 Suppl 5(Suppl 5):S11. doi: 10.1186/2041-1480-2-S5-S11. J Biomed Semantics. 2011. PMID: 22166494 Free PMC article.

2

Moara: a Java library for extracting and normalizing gene and protein mentions.

Neves ML, Carazo JM, Pascual-Montano A. Neves ML, et al. BMC Bioinformatics. 2010 Mar 26;11:157. doi: 10.1186/1471-2105-11-157. BMC Bioinformatics. 2010. PMID: 20346105 Free PMC article.

3

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. Kano Y, et al. BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481. BMC Bioinformatics. 2011. PMID: 22177292 Free PMC article.

4

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Abascal F, Carmona-Saez P, Carazo JM, Pascual-Montano A. Abascal F, et al. Bioinformatics. 2008 May 1;24(9):1208-9. doi: 10.1093/bioinformatics/btn094. Epub 2008 Mar 12. Bioinformatics. 2008. PMID: 18339638

5

Comparison of molecular dynamics and superfamily spaces of protein domain deformation.

Velázquez-Muriel JA, Rueda M, Cuesta I, Pascual-Montano A, Orozco M, Carazo JM. Velázquez-Muriel JA, et al. BMC Struct Biol. 2009 Feb 17;9:6. doi: 10.1186/1472-6807-9-6. BMC Struct Biol. 2009. PMID: 19220918 Free PMC article.

6

XMIPP: a new generation of an open-source image processing package for electron microscopy.

Sorzano CO, Marabini R, Velázquez-Muriel J, Bilbao-Castro JR, Scheres SH, Carazo JM, Pascual-Montano A. Sorzano CO, et al. J Struct Biol. 2004 Nov;148(2):194-204. doi: 10.1016/j.jsb.2004.06.006. J Struct Biol. 2004. PMID: 15477099

7

Integrated analysis of gene expression by Association Rules Discovery.

Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A. Carmona-Saez P, et al. BMC Bioinformatics. 2006 Feb 7;7:54. doi: 10.1186/1471-2105-7-54. BMC Bioinformatics. 2006. PMID: 16464256 Free PMC article.

8

A novel neural network technique for analysis and classification of EM single-particle images.

Pascual-Montano A, Donate LE, Valle M, Bárcena M, Pascual-Marqui RD, Carazo JM. Pascual-Montano A, et al. J Struct Biol. 2001 Feb-Mar;133(2-3):233-45. doi: 10.1006/jsbi.2001.4369. J Struct Biol. 2001. PMID: 11472094

9

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A. Chagoyen M, et al. BMC Bioinformatics. 2006 Jan 26;7:41. doi: 10.1186/1471-2105-7-41. BMC Bioinformatics. 2006. PMID: 16438716 Free PMC article.

10

Nonsmooth nonnegative matrix factorization (nsNMF).

Pascual-Montano A, Carazo JM, Kochi K, Lehmann D, Pascual-Marqui RD. Pascual-Montano A, et al. IEEE Trans Pattern Anal Mach Intell. 2006 Mar;28(3):403-15. doi: 10.1109/TPAMI.2006.60. IEEE Trans Pattern Anal Mach Intell. 2006. PMID: 16526426

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