Baker CJ - Search Results

1

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Rebholz-Schuhmann D, Jimeno Yepes A, Li C, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila JB, Baker CJ, Kuo CJ, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong LI, Rautschka M, Neves ML, Pascual-Montano A, Wei Q, Collier N, Chowdhury MF, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina JL, van Mulligen E, Kors J, Hahn U. Rebholz-Schuhmann D, et al. Among authors: baker cj. J Biomed Semantics. 2011 Oct 6;2 Suppl 5(Suppl 5):S11. doi: 10.1186/2041-1480-2-S5-S11. J Biomed Semantics. 2011. PMID: 22166494 Free PMC article.

2

Towards a systematic evaluation of protein mutation extraction systems.

Witte R, Baker CJ. Witte R, et al. Among authors: baker cj. J Bioinform Comput Biol. 2007 Dec;5(6):1339-59. doi: 10.1142/s0219720007003193. J Bioinform Comput Biol. 2007. PMID: 18172932

3

Algorithms and semantic infrastructure for mutation impact extraction and grounding.

Laurila JB, Naderi N, Witte R, Riazanov A, Kouznetsov A, Baker CJ. Laurila JB, et al. Among authors: baker cj. BMC Genomics. 2010 Dec 2;11 Suppl 4(Suppl 4):S24. doi: 10.1186/1471-2164-11-S4-S24. BMC Genomics. 2010. PMID: 21143808 Free PMC article.

4

Deploying mutation impact text-mining software with the SADI Semantic Web Services framework.

Riazanov A, Laurila JB, Baker CJ. Riazanov A, et al. Among authors: baker cj. BMC Bioinformatics. 2011;12 Suppl 4(Suppl 4):S6. doi: 10.1186/1471-2105-12-S4-S6. Epub 2011 Jul 5. BMC Bioinformatics. 2011. PMID: 21992079 Free PMC article.

5

Between proteins and phenotypes: annotation and interpretation of mutations.

Baker CJ, Rebholz-Schuhmann D. Baker CJ, et al. BMC Bioinformatics. 2009 Aug 27;10 Suppl 8(Suppl 8):I1. doi: 10.1186/1471-2105-10-S8-I1. BMC Bioinformatics. 2009. PMID: 19758463 Free PMC article. No abstract available.

6

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.

Naderi N, Kappler T, Baker CJ, Witte R. Naderi N, et al. Among authors: baker cj. Bioinformatics. 2011 Oct 1;27(19):2721-9. doi: 10.1093/bioinformatics/btr452. Epub 2011 Aug 9. Bioinformatics. 2011. PMID: 21828087

7

Enhanced semantic access to the protein engineering literature using ontologies populated by text mining.

Witte R, Kappler T, Baker CJ. Witte R, et al. Among authors: baker cj. Int J Bioinform Res Appl. 2007;3(3):389-413. doi: 10.1504/IJBRA.2007.015009. Int J Bioinform Res Appl. 2007. PMID: 18048198

8

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery.

Dumontier M, Baker CJ, Baran J, Callahan A, Chepelev L, Cruz-Toledo J, Del Rio NR, Duck G, Furlong LI, Keath N, Klassen D, McCusker JP, Queralt-Rosinach N, Samwald M, Villanueva-Rosales N, Wilkinson MD, Hoehndorf R. Dumontier M, et al. Among authors: baker cj. J Biomed Semantics. 2014 Mar 6;5(1):14. doi: 10.1186/2041-1480-5-14. J Biomed Semantics. 2014. PMID: 24602174 Free PMC article.

9

Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics.

Chepelev LL, Riazanov A, Kouznetsov A, Low HS, Dumontier M, Baker CJ. Chepelev LL, et al. Among authors: baker cj. BMC Bioinformatics. 2011 Jul 26;12:303. doi: 10.1186/1471-2105-12-303. BMC Bioinformatics. 2011. PMID: 21791100 Free PMC article.

10

Benchmarking infrastructure for mutation text mining.

Klein A, Riazanov A, Hindle MM, Baker CJ. Klein A, et al. Among authors: baker cj. J Biomed Semantics. 2014 Feb 25;5(1):11. doi: 10.1186/2041-1480-5-11. J Biomed Semantics. 2014. PMID: 24568600 Free PMC article.

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