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Assemblathon 1: a competitive assessment of de novo short read assembly methods.
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B. Earl D, et al. Among authors: wu w. Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16. Genome Res. 2011. PMID: 21926179 Free PMC article.
Towards statistical summaries of spike train data.
Wu W, Srivastava A. Wu W, et al. J Neurosci Methods. 2011 Jan 30;195(1):107-10. doi: 10.1016/j.jneumeth.2010.11.012. Epub 2010 Nov 27. J Neurosci Methods. 2011. PMID: 21115044
Estimation of a mean template from spike-train data.
Wu W, Srivastava A. Wu W, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2012;2012:1323-6. doi: 10.1109/EMBC.2012.6346181. Annu Int Conf IEEE Eng Med Biol Soc. 2012. PMID: 23366142
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