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Performance assessment of copy number microarray platforms using a spike-in experiment.
Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA. Halper-Stromberg E, et al. Among authors: scharpf r. Bioinformatics. 2011 Apr 15;27(8):1052-60. doi: 10.1093/bioinformatics/btr106. Bioinformatics. 2011. PMID: 21478196 Free PMC article.
SNPchip: R classes and methods for SNP array data.
Scharpf RB, Ting JC, Pevsner J, Ruczinski I. Scharpf RB, et al. Bioinformatics. 2007 Mar 1;23(5):627-8. doi: 10.1093/bioinformatics/btl638. Epub 2007 Jan 4. Bioinformatics. 2007. PMID: 17204461
Pre-processing Agilent microarray data.
Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L. Zahurak M, et al. BMC Bioinformatics. 2007 May 1;8:142. doi: 10.1186/1471-2105-8-142. BMC Bioinformatics. 2007. PMID: 17472750 Free PMC article.
Multiple loci associated with indices of renal function and chronic kidney disease.
Köttgen A, Glazer NL, Dehghan A, Hwang SJ, Katz R, Li M, Yang Q, Gudnason V, Launer LJ, Harris TB, Smith AV, Arking DE, Astor BC, Boerwinkle E, Ehret GB, Ruczinski I, Scharpf RB, Chen YD, de Boer IH, Haritunians T, Lumley T, Sarnak M, Siscovick D, Benjamin EJ, Levy D, Upadhyay A, Aulchenko YS, Hofman A, Rivadeneira F, Uitterlinden AG, van Duijn CM, Chasman DI, Paré G, Ridker PM, Kao WH, Witteman JC, Coresh J, Shlipak MG, Fox CS. Köttgen A, et al. Among authors: scharpf rb. Nat Genet. 2009 Jun;41(6):712-7. doi: 10.1038/ng.377. Epub 2009 May 10. Nat Genet. 2009. PMID: 19430482 Free PMC article.
R classes and methods for SNP array data.
Scharpf RB, Ruczinski I. Scharpf RB, et al. Methods Mol Biol. 2010;593:67-79. doi: 10.1007/978-1-60327-194-3_4. Methods Mol Biol. 2010. PMID: 19957145 Free PMC article.
90 results