Du X - Search Results

1

Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry.

Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG. Manes NP, et al. Among authors: du x. Mol Cell Proteomics. 2011 Mar;10(3):M110.000927. doi: 10.1074/mcp.M110.000927. Epub 2010 Dec 28. Mol Cell Proteomics. 2011. PMID: 21189417 Free PMC article.

2

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.

Du X, Yang F, Manes NP, Stenoien DL, Monroe ME, Adkins JN, States DJ, Purvine SO, Camp DG 2nd, Smith RD. Du X, et al. J Proteome Res. 2008 Jun;7(6):2195-203. doi: 10.1021/pr070510t. Epub 2008 Apr 19. J Proteome Res. 2008. PMID: 18422353 Free PMC article.

3

Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.

Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TR, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD. Manes NP, et al. Among authors: du x. J Proteome Res. 2008 Mar;7(3):960-8. doi: 10.1021/pr070432+. Epub 2008 Jan 19. J Proteome Res. 2008. PMID: 18205298 Free PMC article.

4

Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.

Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD. Du X, et al. J Proteome Res. 2011 Mar 4;10(3):923-31. doi: 10.1021/pr100848a. Epub 2011 Feb 16. J Proteome Res. 2011. PMID: 21175198 Free PMC article.

5

A computational strategy to analyze label-free temporal bottom-up proteomics data.

Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. Du X, et al. J Proteome Res. 2008 Jul;7(7):2595-604. doi: 10.1021/pr0704837. Epub 2008 Apr 29. J Proteome Res. 2008. PMID: 18442284 Free PMC article.

6

Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation.

Yang F, Waters KM, Miller JH, Gritsenko MA, Zhao R, Du X, Livesay EA, Purvine SO, Monroe ME, Wang Y, Camp DG 2nd, Smith RD, Stenoien DL. Yang F, et al. Among authors: du x. PLoS One. 2010 Nov 30;5(11):e14152. doi: 10.1371/journal.pone.0014152. PLoS One. 2010. PMID: 21152398 Free PMC article.

7

Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.

Yang F, Jaitly N, Jayachandran H, Luo Q, Monroe ME, Du X, Gritsenko MA, Zhang R, Anderson DJ, Purvine SO, Adkins JN, Moore RJ, Mottaz HM, Ding SJ, Lipton MS, Camp DG 2nd, Udseth HR, Smith RD, Rossie S. Yang F, et al. Among authors: du x. J Proteome Res. 2007 Nov;6(11):4489-97. doi: 10.1021/pr070068e. Epub 2007 Oct 12. J Proteome Res. 2007. PMID: 17929957 Free PMC article.

8

Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.

Ding SJ, Wang Y, Jacobs JM, Qian WJ, Yang F, Tolmachev AV, Du X, Wang W, Moore RJ, Monroe ME, Purvine SO, Waters K, Heibeck TH, Adkins JN, Camp DG 2nd, Klemke RL, Smith RD. Ding SJ, et al. Among authors: du x. J Proteome Res. 2008 Oct;7(10):4215-24. doi: 10.1021/pr7007785. Epub 2008 Sep 12. J Proteome Res. 2008. PMID: 18785766 Free PMC article.

9

One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks.

Myers OD, Sumner SJ, Li S, Barnes S, Du X. Myers OD, et al. Among authors: du x. Anal Chem. 2017 Sep 5;89(17):8696-8703. doi: 10.1021/acs.analchem.7b00947. Epub 2017 Aug 17. Anal Chem. 2017. PMID: 28752754

10

Protein Structural Analysis via Mass Spectrometry-Based Proteomics.

Artigues A, Nadeau OW, Rimmer MA, Villar MT, Du X, Fenton AW, Carlson GM. Artigues A, et al. Among authors: du x. Adv Exp Med Biol. 2016;919:397-431. doi: 10.1007/978-3-319-41448-5_19. Adv Exp Med Biol. 2016. PMID: 27975228 Free PMC article. Review.

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