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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S. Roberts RJ, et al. Among authors: vitkup d. Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097892 Free PMC article.
The COMBREX project: design, methodology, and initial results.
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S. Anton BP, et al. Among authors: vitkup d. PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. PLoS Biol. 2013. PMID: 24013487 Free PMC article.
Analysis of optimality in natural and perturbed metabolic networks.
Segrè D, Vitkup D, Church GM. Segrè D, et al. Among authors: vitkup d. Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15112-7. doi: 10.1073/pnas.232349399. Epub 2002 Nov 1. Proc Natl Acad Sci U S A. 2002. PMID: 12415116 Free PMC article.
Expression dynamics of a cellular metabolic network.
Kharchenko P, Church GM, Vitkup D. Kharchenko P, et al. Among authors: vitkup d. Mol Syst Biol. 2005;1:2005.0016. doi: 10.1038/msb4100023. Epub 2005 Aug 2. Mol Syst Biol. 2005. PMID: 16729051 Free PMC article.
48 results