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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S. Roberts RJ, et al. Among authors: segre d. Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097892 Free PMC article.
Metabolic network model of a human oral pathogen.
Mazumdar V, Snitkin ES, Amar S, Segrè D. Mazumdar V, et al. Among authors: segre d. J Bacteriol. 2009 Jan;191(1):74-90. doi: 10.1128/JB.01123-08. Epub 2008 Oct 17. J Bacteriol. 2009. PMID: 18931137 Free PMC article.
Environments that induce synthetic microbial ecosystems.
Klitgord N, Segrè D. Klitgord N, et al. Among authors: segre d. PLoS Comput Biol. 2010 Nov 18;6(11):e1001002. doi: 10.1371/journal.pcbi.1001002. PLoS Comput Biol. 2010. PMID: 21124952 Free PMC article.
Ecosystems biology of microbial metabolism.
Klitgord N, Segrè D. Klitgord N, et al. Among authors: segre d. Curr Opin Biotechnol. 2011 Aug;22(4):541-6. doi: 10.1016/j.copbio.2011.04.018. Epub 2011 May 16. Curr Opin Biotechnol. 2011. PMID: 21592777 Review.
Deep sequencing of the oral microbiome reveals signatures of periodontal disease.
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, Amar S. Liu B, et al. Among authors: segre d. PLoS One. 2012;7(6):e37919. doi: 10.1371/journal.pone.0037919. Epub 2012 Jun 4. PLoS One. 2012. PMID: 22675498 Free PMC article.
The COMBREX project: design, methodology, and initial results.
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S. Anton BP, et al. Among authors: segre d. PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. PLoS Biol. 2013. PMID: 24013487 Free PMC article.
200 results