de Ronde JJ - Search Results

1

KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data.

de Ronde JJ, Klijn C, Velds A, Holstege H, Reinders MJ, Jonkers J, Wessels LF. de Ronde JJ, et al. BMC Res Notes. 2010 Nov 11;3:298. doi: 10.1186/1756-0500-3-298. BMC Res Notes. 2010. PMID: 21070656 Free PMC article.

2

Selection of patients for hepatic surgery of colorectal cancer liver metastasis based on genomic aberrations.

Bruin SC, de Ronde JJ, Wiering B, Braaf LM, de Wilt JH, Vincent AD, van Velthuysen ML, Ruers TJ, Wessels LF, van't Veer LJ. Bruin SC, et al. Among authors: de ronde jj. Ann Surg Oncol. 2013 Dec;20 Suppl 3:S560-9. doi: 10.1245/s10434-013-2985-7. Epub 2013 Jun 20. Ann Surg Oncol. 2013. PMID: 23783809

3

Impact of intertumoral heterogeneity on predicting chemotherapy response of BRCA1-deficient mammary tumors.

Rottenberg S, Vollebergh MA, de Hoon B, de Ronde J, Schouten PC, Kersbergen A, Zander SA, Pajic M, Jaspers JE, Jonkers M, Lodén M, Sol W, van der Burg E, Wesseling J, Gillet JP, Gottesman MM, Gribnau J, Wessels L, Linn SC, Jonkers J, Borst P. Rottenberg S, et al. Cancer Res. 2012 May 1;72(9):2350-61. doi: 10.1158/0008-5472.CAN-11-4201. Epub 2012 Mar 6. Cancer Res. 2012. PMID: 22396490 Free PMC article.

4

Platform comparisons for identification of breast cancers with a BRCA-like copy number profile.

Schouten PC, van Dyk E, Braaf LM, Mulder L, Lips EH, de Ronde JJ, Holtman L, Wesseling J, Hauptmann M, Wessels LF, Linn SC, Nederlof PM. Schouten PC, et al. Among authors: de ronde jj. Breast Cancer Res Treat. 2013 Jun;139(2):317-27. doi: 10.1007/s10549-013-2558-2. Epub 2013 May 14. Breast Cancer Res Treat. 2013. PMID: 23670131

5

Concordance of clinical and molecular breast cancer subtyping in the context of preoperative chemotherapy response.

de Ronde JJ, Hannemann J, Halfwerk H, Mulder L, Straver ME, Vrancken Peeters MJ, Wesseling J, van de Vijver M, Wessels LF, Rodenhuis S. de Ronde JJ, et al. Breast Cancer Res Treat. 2010 Jan;119(1):119-26. doi: 10.1007/s10549-009-0499-6. Epub 2009 Aug 8. Breast Cancer Res Treat. 2010. PMID: 19669409

6

SERPINA6, BEX1, AGTR1, SLC26A3, and LAPTM4B are markers of resistance to neoadjuvant chemotherapy in HER2-negative breast cancer.

de Ronde JJ, Lips EH, Mulder L, Vincent AD, Wesseling J, Nieuwland M, Kerkhoven R, Vrancken Peeters MJ, Sonke GS, Rodenhuis S, Wessels LF. de Ronde JJ, et al. Breast Cancer Res Treat. 2013 Jan;137(1):213-23. doi: 10.1007/s10549-012-2340-x. Epub 2012 Dec 1. Breast Cancer Res Treat. 2013. PMID: 23203637

7

Identifying subgroup markers in heterogeneous populations.

de Ronde JJ, Rigaill G, Rottenberg S, Rodenhuis S, Wessels LF. de Ronde JJ, et al. Nucleic Acids Res. 2013 Nov;41(21):e200. doi: 10.1093/nar/gkt845. Epub 2013 Sep 22. Nucleic Acids Res. 2013. PMID: 24062158 Free PMC article.

8

Breast cancer subtype specific classifiers of response to neoadjuvant chemotherapy do not outperform classifiers trained on all subtypes.

de Ronde JJ, Bonder MJ, Lips EH, Rodenhuis S, Wessels LF. de Ronde JJ, et al. PLoS One. 2014 Feb 18;9(2):e88551. doi: 10.1371/journal.pone.0088551. eCollection 2014. PLoS One. 2014. PMID: 24558399 Free PMC article.

9

The T7-primer is a source of experimental bias and introduces variability between microarray platforms.

Kerkhoven RM, Sie D, Nieuwland M, Heimerikx M, De Ronde J, Brugman W, Velds A. Kerkhoven RM, et al. PLoS One. 2008 Apr 23;3(4):e1980. doi: 10.1371/journal.pone.0001980. PLoS One. 2008. PMID: 18431470 Free PMC article.

10

Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.

Mittempergher L, de Ronde JJ, Nieuwland M, Kerkhoven RM, Simon I, Rutgers EJ, Wessels LF, Van't Veer LJ. Mittempergher L, et al. Among authors: de ronde jj. PLoS One. 2011 Feb 11;6(2):e17163. doi: 10.1371/journal.pone.0017163. PLoS One. 2011. PMID: 21347257 Free PMC article.

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