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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Hua… See abstract for full author list ➔ Shi L, et al. Among authors: irizarry ra. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.
Multiple-laboratory comparison of microarray platforms.
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W. Irizarry RA, et al. Nat Methods. 2005 May;2(5):345-50. doi: 10.1038/nmeth756. Epub 2005 Apr 21. Nat Methods. 2005. PMID: 15846361 Free article.
The External RNA Controls Consortium: a progress report.
Baker SC, Bauer SR, Beyer RP, Brenton JD, Bromley B, Burrill J, Causton H, Conley MP, Elespuru R, Fero M, Foy C, Fuscoe J, Gao X, Gerhold DL, Gilles P, Goodsaid F, Guo X, Hackett J, Hockett RD, Ikonomi P, Irizarry RA, Kawasaki ES, Kaysser-Kranich T, Kerr K, Kiser G, Koch WH, Lee KY, Liu C, Liu ZL, Lucas A, Manohar CF, Miyada G, Modrusan Z, Parkes H, Puri RK, Reid L, Ryder TB, Salit M, Samaha RR, Scherf U, Sendera TJ, Setterquist RA, Shi L, Shippy R, Soriano JV, Wagar EA, Warrington JA, Williams M, Wilmer F, Wilson M, Wolber PK, Wu X, Zadro R; External RNA Controls Consortium. Baker SC, et al. Among authors: irizarry ra. Nat Methods. 2005 Oct;2(10):731-4. doi: 10.1038/nmeth1005-731. Nat Methods. 2005. PMID: 16179916
Stacking the deck: double-tiled DNA microarrays.
Wheelan SJ, Martínez-Murillo F, Irizarry RA, Boeke JD. Wheelan SJ, et al. Among authors: irizarry ra. Nat Methods. 2006 Nov;3(11):903-7. doi: 10.1038/nmeth951. Nat Methods. 2006. PMID: 17060914
Transposon insertion site profiling chip (TIP-chip).
Wheelan SJ, Scheifele LZ, Martínez-Murillo F, Irizarry RA, Boeke JD. Wheelan SJ, et al. Among authors: irizarry ra. Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17632-7. doi: 10.1073/pnas.0605450103. Epub 2006 Nov 13. Proc Natl Acad Sci U S A. 2006. PMID: 17101968 Free PMC article.
A gene expression bar code for microarray data.
Zilliox MJ, Irizarry RA. Zilliox MJ, et al. Among authors: irizarry ra. Nat Methods. 2007 Nov;4(11):911-3. doi: 10.1038/nmeth1102. Epub 2007 Sep 30. Nat Methods. 2007. PMID: 17906632 Free PMC article.
Frozen robust multiarray analysis (fRMA).
McCall MN, Bolstad BM, Irizarry RA. McCall MN, et al. Among authors: irizarry ra. Biostatistics. 2010 Apr;11(2):242-53. doi: 10.1093/biostatistics/kxp059. Epub 2010 Jan 22. Biostatistics. 2010. PMID: 20097884 Free PMC article.
180 results