Pepper SD - Search Results

1

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling.

Bradford JR, Hey Y, Yates T, Li Y, Pepper SD, Miller CJ. Bradford JR, et al. Among authors: pepper sd. BMC Genomics. 2010 May 5;11:282. doi: 10.1186/1471-2164-11-282. BMC Genomics. 2010. PMID: 20444259 Free PMC article.

2

Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells.

Rothwell DG, Li Y, Ayub M, Tate C, Newton G, Hey Y, Carter L, Faulkner S, Moro M, Pepper S, Miller C, Blackhall F, Bertolini G, Roz L, Dive C, Brady G. Rothwell DG, et al. BMC Genomics. 2014 Dec 17;15(1):1129. doi: 10.1186/1471-2164-15-1129. BMC Genomics. 2014. PMID: 25519510 Free PMC article.

3

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis.

Sims AH, Smethurst GJ, Hey Y, Okoniewski MJ, Pepper SD, Howell A, Miller CJ, Clarke RB. Sims AH, et al. Among authors: pepper sd. BMC Med Genomics. 2008 Sep 21;1:42. doi: 10.1186/1755-8794-1-42. BMC Med Genomics. 2008. PMID: 18803878 Free PMC article.

4

Interesting times for microarray expression profiling.

Hey Y, Pepper SD. Hey Y, et al. Among authors: pepper sd. Brief Funct Genomic Proteomic. 2009 May;8(3):170-3. doi: 10.1093/bfgp/elp012. Epub 2009 May 27. Brief Funct Genomic Proteomic. 2009. PMID: 19474127

5

The utility of MAS5 expression summary and detection call algorithms.

Pepper SD, Saunders EK, Edwards LE, Wilson CL, Miller CJ. Pepper SD, et al. BMC Bioinformatics. 2007 Jul 30;8:273. doi: 10.1186/1471-2105-8-273. BMC Bioinformatics. 2007. PMID: 17663764 Free PMC article.

6

Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays.

Linton K, Hey Y, Dibben S, Miller C, Freemont A, Radford J, Pepper S. Linton K, et al. Biotechniques. 2009 Jul;47(1):587-96. doi: 10.2144/000113169. Biotechniques. 2009. PMID: 19594443 Free article.

7

Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours.

Linton KM, Hey Y, Saunders E, Jeziorska M, Denton J, Wilson CL, Swindell R, Dibben S, Miller CJ, Pepper SD, Radford JA, Freemont AJ. Linton KM, et al. Among authors: pepper sd. Br J Cancer. 2008 Apr 22;98(8):1403-14. doi: 10.1038/sj.bjc.6604316. Epub 2008 Apr 1. Br J Cancer. 2008. PMID: 18382428 Free PMC article.

8

Mycoplasma infection significantly alters microarray gene expression profiles.

Miller CJ, Kassem HS, Pepper SD, Hey Y, Ward TH, Margison GP. Miller CJ, et al. Among authors: pepper sd. Biotechniques. 2003 Oct;35(4):812-4. doi: 10.2144/03354mt02. Biotechniques. 2003. PMID: 14579747 Free article. No abstract available.

9

Amplification protocols introduce systematic but reproducible errors into gene expression studies.

Wilson CL, Pepper SD, Hey Y, Miller CJ. Wilson CL, et al. Among authors: pepper sd. Biotechniques. 2004 Mar;36(3):498-506. doi: 10.2144/04363RN05. Biotechniques. 2004. PMID: 15038166 Free article.

10

High correspondence between Affymetrix exon and standard expression arrays.

Okoniewski MJ, Hey Y, Pepper SD, Miller CJ. Okoniewski MJ, et al. Among authors: pepper sd. Biotechniques. 2007 Feb;42(2):181-5. doi: 10.2144/000112315. Biotechniques. 2007. PMID: 17373482 Free article.

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