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ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale.
Halling-Brown M, Pappalardo F, Rapin N, Zhang P, Alemani D, Emerson A, Castiglione F, Duroux P, Pennisi M, Miotto O, Churchill D, Rossi E, Moss DS, Sansom CE, Bernaschi M, Lefranc MP, Brunak S, Lund O, Motta S, Lollini PL, Murgo A, Palladini A, Basford KE, Brusic V, Shepherd AJ. Halling-Brown M, et al. Among authors: rapin n. Philos Trans A Math Phys Eng Sci. 2010 Jun 13;368(1920):2799-815. doi: 10.1098/rsta.2010.0067. Philos Trans A Math Phys Eng Sci. 2010. PMID: 20439274
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Pappalardo F, Halling-Brown MD, Rapin N, Zhang P, Alemani D, Emerson A, Paci P, Duroux P, Pennisi M, Palladini A, Miotto O, Churchill D, Rossi E, Shepherd AJ, Moss DS, Castiglione F, Bernaschi M, Lefranc MP, Brunak S, Motta S, Lollini PL, Basford KE, Brusic V. Pappalardo F, et al. Among authors: rapin n. Brief Bioinform. 2009 May;10(3):330-40. doi: 10.1093/bib/bbp014. Brief Bioinform. 2009. PMID: 19383844
Immune system simulation online.
Rapin N, Lund O, Castiglione F. Rapin N, et al. Bioinformatics. 2011 Jul 15;27(14):2013-4. doi: 10.1093/bioinformatics/btr335. Epub 2011 Jun 17. Bioinformatics. 2011. PMID: 21685045
MHC motif viewer.
Rapin N, Hoof I, Lund O, Nielsen M. Rapin N, et al. Immunogenetics. 2008 Dec;60(12):759-65. doi: 10.1007/s00251-008-0330-2. Epub 2008 Sep 3. Immunogenetics. 2008. PMID: 18766337 Free PMC article.
Bistability in autoimmune diseases.
Rapin N, Mosekilde E, Lund O. Rapin N, et al. Autoimmunity. 2011 Jun;44(4):256-60. doi: 10.3109/08916934.2010.523233. Epub 2011 Jan 19. Autoimmunity. 2011. PMID: 21244341
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.
Ecker S, Chen L, Pancaldi V, Bagger FO, Fernández JM, Carrillo de Santa Pau E, Juan D, Mann AL, Watt S, Casale FP, Sidiropoulos N, Rapin N, Merkel A; BLUEPRINT Consortium; Stunnenberg HG, Stegle O, Frontini M, Downes K, Pastinen T, Kuijpers TW, Rico D, Valencia A, Beck S, Soranzo N, Paul DS. Ecker S, et al. Among authors: rapin n. Genome Biol. 2017 Jan 26;18(1):18. doi: 10.1186/s13059-017-1156-8. Genome Biol. 2017. PMID: 28126036 Free PMC article.
72 results