Chen BY - Search Results

1

Mapping of ligand-binding cavities in proteins.

Andersson CD, Chen BY, Linusson A. Andersson CD, et al. Among authors: chen by. Proteins. 2010 May 1;78(6):1408-22. doi: 10.1002/prot.22655. Proteins. 2010. PMID: 20034113 Free PMC article.

2

A regionalizable statistical model of intersecting regions in protein-ligand binding cavities.

Chen BY, Bandyopadhyay S. Chen BY, et al. J Bioinform Comput Biol. 2012 Jun;10(3):1242004. doi: 10.1142/S0219720012420048. J Bioinform Comput Biol. 2012. PMID: 22809380

3

VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.

Chen BY, Honig B. Chen BY, et al. PLoS Comput Biol. 2010 Aug 12;6(8):e1000881. doi: 10.1371/journal.pcbi.1000881. PLoS Comput Biol. 2010. PMID: 20814581 Free PMC article.

4

HBcompare: Classifying Ligand Binding Preferences with Hydrogen Bond Topology.

Tam JZ, Kong Z, Ahmed O, He L, Chen BY. Tam JZ, et al. Among authors: chen by. Biomolecules. 2022 Oct 28;12(11):1589. doi: 10.3390/biom12111589. Biomolecules. 2022. PMID: 36358939 Free PMC article.

5

Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.

Bryant DH, Moll M, Chen BY, Fofanov VY, Kavraki LE. Bryant DH, et al. Among authors: chen by. BMC Bioinformatics. 2010 May 11;11:242. doi: 10.1186/1471-2105-11-242. BMC Bioinformatics. 2010. PMID: 20459833 Free PMC article.

6

VASP-E: specificity annotation with a volumetric analysis of electrostatic isopotentials.

Chen BY. Chen BY. PLoS Comput Biol. 2014 Aug 28;10(8):e1003792. doi: 10.1371/journal.pcbi.1003792. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25166865 Free PMC article.

7

Modeling regionalized volumetric differences in protein-ligand binding cavities.

Chen BY, Bandyopadhyay S. Chen BY, et al. Proteome Sci. 2012 Jun 21;10 Suppl 1(Suppl 1):S6. doi: 10.1186/1477-5956-10-S1-S6. Proteome Sci. 2012. PMID: 22759583 Free PMC article.

8

The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs.

Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE. Chen BY, et al. J Comput Biol. 2007 Jul-Aug;14(6):791-816. doi: 10.1089/cmb.2007.R017. J Comput Biol. 2007. PMID: 17691895

9

Conformational Sampling Reveals Amino Acids with a Steric Influence on Specificity.

Guo Z, Chen BY. Guo Z, et al. Among authors: chen by. J Comput Biol. 2015 Sep;22(9):861-75. doi: 10.1089/cmb.2015.0117. J Comput Biol. 2015. PMID: 26335806

10

The 6th Computational Structural Bioinformatics Workshop.

He J, Shehu A, Haspel N, Chen B. He J, et al. BMC Struct Biol. 2013;13 Suppl 1(Suppl 1):I1. doi: 10.1186/1472-6807-13-S1-I1. Epub 2013 Nov 8. BMC Struct Biol. 2013. PMID: 24564893 Free PMC article.

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