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Transcriptional profiling of the dose response: a more powerful approach for characterizing drug activities.
Ji RR, de Silva H, Jin Y, Bruccoleri RE, Cao J, He A, Huang W, Kayne PS, Neuhaus IM, Ott KH, Penhallow B, Cockett MI, Neubauer MG, Siemers NO, Ross-Macdonald P. Ji RR, et al. Among authors: bruccoleri re. PLoS Comput Biol. 2009 Sep;5(9):e1000512. doi: 10.1371/journal.pcbi.1000512. Epub 2009 Sep 18. PLoS Comput Biol. 2009. PMID: 19763178 Free PMC article.
SDRS--an algorithm for analyzing large-scale dose-response data.
Ji RR, Siemers NO, Lei M, Schweizer L, Bruccoleri RE. Ji RR, et al. Among authors: bruccoleri re. Bioinformatics. 2011 Oct 15;27(20):2921-3. doi: 10.1093/bioinformatics/btr489. Epub 2011 Aug 24. Bioinformatics. 2011. PMID: 21865301 Free PMC article.
FDR-FET: an optimizing gene set enrichment analysis method.
Ji RR, Ott KH, Yordanova R, Bruccoleri RE. Ji RR, et al. Among authors: bruccoleri re. Adv Appl Bioinform Chem. 2011;4:37-42. doi: 10.2147/AABC.S15840. Epub 2011 Mar 15. Adv Appl Bioinform Chem. 2011. PMID: 21918636 Free PMC article.
Concordance analysis of microbial genomes.
Bruccoleri RE, Dougherty TJ, Davison DB. Bruccoleri RE, et al. Nucleic Acids Res. 1998 Oct 1;26(19):4482-6. doi: 10.1093/nar/26.19.4482. Nucleic Acids Res. 1998. PMID: 9742253 Free PMC article.
60 results