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Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.
Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ; CTSA Biomedical Informatics Key Function Committee. Bernstam EV, et al. Among authors: athey bd. Acad Med. 2009 Jul;84(7):964-70. doi: 10.1097/ACM.0b013e3181a8144d. Acad Med. 2009. PMID: 19550198 Free PMC article. Review.
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.
Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, Wright Z, Athey BD, Becich MJ, Ginsburg GS, Musen MA, Smith KA, Tarantal AF, Rubin DL, Lyster P. Tenenbaum JD, et al. Among authors: athey bd. J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16. J Biomed Inform. 2011. PMID: 20955817 Free PMC article.
The NIH National Center for Integrative Biomedical Informatics (NCIBI).
Athey BD, Cavalcoli JD, Jagadish HV, Omenn GS, Mirel B, Kretzler M, Burant C, Isokpehi RD, DeLisi C; NCIBI faculty, trainees, and staff. Athey BD, et al. J Am Med Inform Assoc. 2012 Mar-Apr;19(2):166-70. doi: 10.1136/amiajnl-2011-000552. Epub 2011 Nov 19. J Am Med Inform Assoc. 2012. PMID: 22101971 Free PMC article.
The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice.
Boyd AD, Saxman PR, Hunscher DA, Smith KA, Morris TD, Kaston M, Bayoff F, Rogers B, Hayes P, Rajeev N, Kline-Rogers E, Eagle K, Clauw D, Greden JF, Green LA, Athey BD. Boyd AD, et al. Among authors: athey bd. J Am Med Inform Assoc. 2009 Nov-Dec;16(6):784-91. doi: 10.1197/jamia.M2985. Epub 2009 Aug 28. J Am Med Inform Assoc. 2009. PMID: 19717803 Free PMC article.
Open Biomedical Ontology-based Medline exploration.
Xuan W, Dai M, Mirel B, Song J, Athey B, Watson SJ, Meng F. Xuan W, et al. BMC Bioinformatics. 2009 May 6;10 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2105-10-S5-S6. BMC Bioinformatics. 2009. PMID: 19426463 Free PMC article.
iTools: a framework for classification, categorization and integration of computational biology resources.
Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW. Dinov ID, et al. PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265. PLoS One. 2008. PMID: 18509477 Free PMC article.
Cross-domain neurobiology data integration and exploration.
Xuan W, Dai M, Buckner J, Mirel B, Song J, Athey B, Watson SJ, Meng F. Xuan W, et al. BMC Genomics. 2010 Dec 1;11 Suppl 3(Suppl 3):S6. doi: 10.1186/1471-2164-11-S3-S6. BMC Genomics. 2010. PMID: 21143788 Free PMC article.
An active visual search interface for Medline.
Xuan W, Dai M, Mirel B, Wilson J, Athey B, Watson SJ, Meng F. Xuan W, et al. Comput Syst Bioinformatics Conf. 2007;6:359-69. Comput Syst Bioinformatics Conf. 2007. PMID: 17951838 Free article.
ConceptGen: a gene set enrichment and gene set relation mapping tool.
Sartor MA, Mahavisno V, Keshamouni VG, Cavalcoli J, Wright Z, Karnovsky A, Kuick R, Jagadish HV, Mirel B, Weymouth T, Athey B, Omenn GS. Sartor MA, et al. Bioinformatics. 2010 Feb 15;26(4):456-63. doi: 10.1093/bioinformatics/btp683. Epub 2009 Dec 9. Bioinformatics. 2010. PMID: 20007254 Free PMC article.
73 results