Baranov PV - Search Results

1

Codon size reduction as the origin of the triplet genetic code.

Baranov PV, Venin M, Provan G. Baranov PV, et al. PLoS One. 2009 May 27;4(5):e5708. doi: 10.1371/journal.pone.0005708. PLoS One. 2009. PMID: 19479032 Free PMC article.

2

CodonLogo: a sequence logo-based viewer for codon patterns.

Sharma V, Murphy DP, Provan G, Baranov PV. Sharma V, et al. Among authors: baranov pv. Bioinformatics. 2012 Jul 15;28(14):1935-6. doi: 10.1093/bioinformatics/bts295. Epub 2012 May 17. Bioinformatics. 2012. PMID: 22595210 Free PMC article.

3

Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Baranov PV, Atkins JF, Yordanova MM. Baranov PV, et al. Nat Rev Genet. 2015 Sep;16(9):517-29. doi: 10.1038/nrg3963. Epub 2015 Aug 11. Nat Rev Genet. 2015. PMID: 26260261 Review.

4

Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum.

Heaphy SM, Mariotti M, Gladyshev VN, Atkins JF, Baranov PV. Heaphy SM, et al. Among authors: baranov pv. Mol Biol Evol. 2016 Nov;33(11):2885-2889. doi: 10.1093/molbev/msw166. Epub 2016 Aug 8. Mol Biol Evol. 2016. PMID: 27501944 Free PMC article.

5

Selection Shapes Synonymous Stop Codon Use in Mammals.

Seoighe C, Kiniry SJ, Peters A, Baranov PV, Yang H. Seoighe C, et al. Among authors: baranov pv. J Mol Evol. 2020 Sep;88(7):549-561. doi: 10.1007/s00239-020-09957-x. Epub 2020 Jul 2. J Mol Evol. 2020. PMID: 32617614

6

Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution.

Gaydukova SA, Moldovan MA, Vallesi A, Heaphy SM, Atkins JF, Gelfand MS, Baranov PV. Gaydukova SA, et al. Among authors: baranov pv. Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221683120. doi: 10.1073/pnas.2221683120. Epub 2023 May 22. Proc Natl Acad Sci U S A. 2023. PMID: 37216548 Free PMC article.

7

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences.

Ivanov IP, Firth AE, Michel AM, Atkins JF, Baranov PV. Ivanov IP, et al. Among authors: baranov pv. Nucleic Acids Res. 2011 May;39(10):4220-34. doi: 10.1093/nar/gkr007. Epub 2011 Jan 25. Nucleic Acids Res. 2011. PMID: 21266472 Free PMC article.

8

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment.

Sharma V, Firth AE, Antonov I, Fayet O, Atkins JF, Borodovsky M, Baranov PV. Sharma V, et al. Among authors: baranov pv. Mol Biol Evol. 2011 Nov;28(11):3195-211. doi: 10.1093/molbev/msr155. Epub 2011 Jun 14. Mol Biol Evol. 2011. PMID: 21673094 Free PMC article.

9

Observation of dually decoded regions of the human genome using ribosome profiling data.

Michel AM, Choudhury KR, Firth AE, Ingolia NT, Atkins JF, Baranov PV. Michel AM, et al. Among authors: baranov pv. Genome Res. 2012 Nov;22(11):2219-29. doi: 10.1101/gr.133249.111. Epub 2012 May 16. Genome Res. 2012. PMID: 22593554 Free PMC article.

10

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.

O'Connor PB, Li GW, Weissman JS, Atkins JF, Baranov PV. O'Connor PB, et al. Among authors: baranov pv. Bioinformatics. 2013 Jun 15;29(12):1488-91. doi: 10.1093/bioinformatics/btt184. Epub 2013 Apr 19. Bioinformatics. 2013. PMID: 23603333 Free PMC article.

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