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Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB. Li P, et al. Among authors: wassink i. BMC Bioinformatics. 2008 Aug 7;9:334. doi: 10.1186/1471-2105-9-334. BMC Bioinformatics. 2008. PMID: 18687127 Free PMC article.
Using R in Taverna: RShell v1.2.
Wassink I, Rauwerda H, Neerincx PB, van der Vet PE, Breit TM, Leunissen JA, Nijholt A. Wassink I, et al. BMC Res Notes. 2009 Jul 16;2:138. doi: 10.1186/1756-0500-2-138. BMC Res Notes. 2009. PMID: 19607662 Free PMC article.
WikiPathways 2024: next generation pathway database.
Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Acosta JM, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. Agrawal A, et al. Among authors: wassink i. Nucleic Acids Res. 2024 Jan 5;52(D1):D679-D689. doi: 10.1093/nar/gkad960. Nucleic Acids Res. 2024. PMID: 37941138 Free PMC article.