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Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB. Li P, et al. Among authors: velarde g. BMC Bioinformatics. 2008 Aug 7;9:334. doi: 10.1186/1471-2105-9-334. BMC Bioinformatics. 2008. PMID: 18687127 Free PMC article.
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H. Aslett M, et al. Among authors: velarde g. Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20. Nucleic Acids Res. 2010. PMID: 19843604 Free PMC article.
GeneDB--an annotation database for pathogens.
Logan-Klumpler FJ, De Silva N, Boehme U, Rogers MB, Velarde G, McQuillan JA, Carver T, Aslett M, Olsen C, Subramanian S, Phan I, Farris C, Mitra S, Ramasamy G, Wang H, Tivey A, Jackson A, Houston R, Parkhill J, Holden M, Harb OS, Brunk BP, Myler PJ, Roos D, Carrington M, Smith DF, Hertz-Fowler C, Berriman M. Logan-Klumpler FJ, et al. Among authors: velarde g. Nucleic Acids Res. 2012 Jan;40(Database issue):D98-108. doi: 10.1093/nar/gkr1032. Epub 2011 Nov 23. Nucleic Acids Res. 2012. PMID: 22116062 Free PMC article.
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni.
Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M. Protasio AV, et al. Among authors: velarde gs. PLoS Negl Trop Dis. 2012 Jan;6(1):e1455. doi: 10.1371/journal.pntd.0001455. Epub 2012 Jan 10. PLoS Negl Trop Dis. 2012. PMID: 22253936 Free PMC article.
3D structure of the skeletal muscle dihydropyridine receptor.
Wang MC, Velarde G, Ford RC, Berrow NS, Dolphin AC, Kitmitto A. Wang MC, et al. Among authors: velarde g. J Mol Biol. 2002 Oct 11;323(1):85-98. doi: 10.1016/s0022-2836(02)00890-2. J Mol Biol. 2002. PMID: 12368101
77 results