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Consistent probabilistic outputs for protein function prediction.
Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS. Obozinski G, et al. Among authors: grant c. Genome Biol. 2008;9 Suppl 1(Suppl 1):S6. doi: 10.1186/gb-2008-9-s1-s6. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613950 Free PMC article.
Widely distributed noncoding purifying selection in the human genome.
Asthana S, Noble WS, Kryukov G, Grant CE, Sunyaev S, Stamatoyannopoulos JA. Asthana S, et al. Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12410-5. doi: 10.1073/pnas.0705140104. Epub 2007 Jul 17. Proc Natl Acad Sci U S A. 2007. PMID: 17640883 Free PMC article.
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: grant c. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.
MEME SUITE: tools for motif discovery and searching.
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. Bailey TL, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. doi: 10.1093/nar/gkp335. Epub 2009 May 20. Nucleic Acids Res. 2009. PMID: 19458158 Free PMC article.
FIMO: scanning for occurrences of a given motif.
Grant CE, Bailey TL, Noble WS. Grant CE, et al. Bioinformatics. 2011 Apr 1;27(7):1017-8. doi: 10.1093/bioinformatics/btr064. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330290 Free PMC article.
Improved similarity scores for comparing motifs.
Tanaka E, Bailey T, Grant CE, Noble WS, Keich U. Tanaka E, et al. Bioinformatics. 2011 Jun 15;27(12):1603-9. doi: 10.1093/bioinformatics/btr257. Epub 2011 May 4. Bioinformatics. 2011. PMID: 21543443 Free PMC article.
Crux: rapid open source protein tandem mass spectrometry analysis.
McIlwain S, Tamura K, Kertesz-Farkas A, Grant CE, Diament B, Frewen B, Howbert JJ, Hoopmann MR, Käll L, Eng JK, MacCoss MJ, Noble WS. McIlwain S, et al. J Proteome Res. 2014 Oct 3;13(10):4488-91. doi: 10.1021/pr500741y. Epub 2014 Sep 9. J Proteome Res. 2014. PMID: 25182276 Free PMC article.
The MEME Suite.
Bailey TL, Johnson J, Grant CE, Noble WS. Bailey TL, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W39-49. doi: 10.1093/nar/gkv416. Epub 2015 May 7. Nucleic Acids Res. 2015. PMID: 25953851 Free PMC article.
MCAST: scanning for cis-regulatory motif clusters.
Grant CE, Johnson J, Bailey TL, Noble WS. Grant CE, et al. Bioinformatics. 2016 Apr 15;32(8):1217-9. doi: 10.1093/bioinformatics/btv750. Epub 2015 Dec 24. Bioinformatics. 2016. PMID: 26704599 Free PMC article.
2,084 results