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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: warde farley d. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q. Warde-Farley D, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537. Nucleic Acids Res. 2010. PMID: 20576703 Free PMC article.
Mixture model for sub-phenotyping in GWAS.
Warde-Farley D, Brudno M, Morris Q, Goldenberg A. Warde-Farley D, et al. Pac Symp Biocomput. 2012:363-74. Pac Symp Biocomput. 2012. PMID: 22174291 Free article.
Brain tumor segmentation with Deep Neural Networks.
Havaei M, Davy A, Warde-Farley D, Biard A, Courville A, Bengio Y, Pal C, Jodoin PM, Larochelle H. Havaei M, et al. Among authors: warde farley d. Med Image Anal. 2017 Jan;35:18-31. doi: 10.1016/j.media.2016.05.004. Epub 2016 May 19. Med Image Anal. 2017. PMID: 27310171