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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: troyanskaya og. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.
Hierarchical multi-label prediction of gene function.
Barutcuoglu Z, Schapire RE, Troyanskaya OG. Barutcuoglu Z, et al. Among authors: troyanskaya og. Bioinformatics. 2006 Apr 1;22(7):830-6. doi: 10.1093/bioinformatics/btk048. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410319
Finding function: evaluation methods for functional genomic data.
Myers CL, Barrett DR, Hibbs MA, Huttenhower C, Troyanskaya OG. Myers CL, et al. Among authors: troyanskaya og. BMC Genomics. 2006 Jul 25;7:187. doi: 10.1186/1471-2164-7-187. BMC Genomics. 2006. PMID: 16869964 Free PMC article.
A genomewide functional network for the laboratory mouse.
Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG. Guan Y, et al. Among authors: troyanskaya og. PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165. PLoS Comput Biol. 2008. PMID: 18818725 Free PMC article.
The genetic landscape of a cell.
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C. Costanzo M, et al. Among authors: troyanskaya og. Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823. Science. 2010. PMID: 20093466 Free PMC article.
169 results