Hill DP - Search Results

1

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: hill dp. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.

2

Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

Hill DP, Blake JA, Richardson JE, Ringwald M. Hill DP, et al. Genome Res. 2002 Dec;12(12):1982-91. doi: 10.1101/gr.580102. Genome Res. 2002. PMID: 12466303 Free PMC article.

3

Ontological visualization of protein-protein interactions.

Drabkin HJ, Hollenbeck C, Hill DP, Blake JA. Drabkin HJ, et al. Among authors: hill dp. BMC Bioinformatics. 2005 Feb 11;6:29. doi: 10.1186/1471-2105-6-29. BMC Bioinformatics. 2005. PMID: 15707487 Free PMC article.

4

Gene Ontology annotations: what they mean and where they come from.

Hill DP, Smith B, McAndrews-Hill MS, Blake JA. Hill DP, et al. BMC Bioinformatics. 2008 Apr 29;9 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2105-9-S5-S2. BMC Bioinformatics. 2008. PMID: 18460184 Free PMC article.

5

An en masse phenotype and function prediction system for Mus musculus.

Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP. Taşan M, et al. Among authors: hill dp. Genome Biol. 2008;9 Suppl 1(Suppl 1):S8. doi: 10.1186/gb-2008-9-s1-s8. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613952 Free PMC article.

6

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.

Tripathi S, Christie KR, Balakrishnan R, Huntley R, Hill DP, Thommesen L, Blake JA, Kuiper M, Lægreid A. Tripathi S, et al. Among authors: hill dp. Database (Oxford). 2013 Aug 27;2013:bat062. doi: 10.1093/database/bat062. Print 2013. Database (Oxford). 2013. PMID: 23981286 Free PMC article.

7

Methodology for the inference of gene function from phenotype data.

Ascensao JA, Dolan ME, Hill DP, Blake JA. Ascensao JA, et al. Among authors: hill dp. BMC Bioinformatics. 2014 Dec 12;15(1):405. doi: 10.1186/s12859-014-0405-z. BMC Bioinformatics. 2014. PMID: 25495798 Free PMC article.

8

Application of comparative biology in GO functional annotation: the mouse model.

Drabkin HJ, Christie KR, Dolan ME, Hill DP, Ni L, Sitnikov D, Blake JA. Drabkin HJ, et al. Among authors: hill dp. Mamm Genome. 2015 Oct;26(9-10):574-83. doi: 10.1007/s00335-015-9580-0. Epub 2015 Jul 4. Mamm Genome. 2015. PMID: 26141960 Free PMC article.

9

Modeling biochemical pathways in the gene ontology.

Hill DP, D'Eustachio P, Berardini TZ, Mungall CJ, Renedo N, Blake JA. Hill DP, et al. Database (Oxford). 2016 Sep 1;2016:baw126. doi: 10.1093/database/baw126. Print 2016. Database (Oxford). 2016. PMID: 27589964 Free PMC article.

10

Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease.

Dolan ME, Hill DP, Mukherjee G, McAndrews MS, Chesler EJ, Blake JA. Dolan ME, et al. Among authors: hill dp. Sci Rep. 2020 Nov 30;10(1):20848. doi: 10.1038/s41598-020-77632-8. Sci Rep. 2020. PMID: 33257774 Free PMC article.

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