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DNA conformations and their sequence preferences.
Svozil D, Kalina J, Omelka M, Schneider B. Svozil D, et al. Nucleic Acids Res. 2008 Jun;36(11):3690-706. doi: 10.1093/nar/gkn260. Epub 2008 May 13. Nucleic Acids Res. 2008. PMID: 18477633 Free PMC article.
Bioinformatic analysis of the protein/DNA interface.
Schneider B, Cerný J, Svozil D, Cech P, Gelly JC, de Brevern AG. Schneider B, et al. Among authors: svozil d. Nucleic Acids Res. 2014 Mar;42(5):3381-94. doi: 10.1093/nar/gkt1273. Epub 2013 Dec 11. Nucleic Acids Res. 2014. PMID: 24335080 Free PMC article.
A DNA structural alphabet provides new insight into DNA flexibility.
Schneider B, Boǽíková P, Nečasová I, Čech P, Svozil D, Černý J. Schneider B, et al. Among authors: svozil d. Acta Crystallogr D Struct Biol. 2018 Jan 1;74(Pt 1):52-64. doi: 10.1107/S2059798318000050. Epub 2018 Jan 1. Acta Crystallogr D Struct Biol. 2018. PMID: 29372899 Free PMC article.
SETTER: web server for RNA structure comparison.
Cech P, Svozil D, Hoksza D. Cech P, et al. Among authors: svozil d. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W42-8. doi: 10.1093/nar/gks560. Epub 2012 Jun 11. Nucleic Acids Res. 2012. PMID: 22693209 Free PMC article.
Geometrical and electronic structure variability of the sugar-phosphate backbone in nucleic acids.
Svozil D, Sponer JE, Marchan I, Pérez A, Cheatham TE 3rd, Forti F, Luque FJ, Orozco M, Sponer J. Svozil D, et al. J Phys Chem B. 2008 Jul 10;112(27):8188-97. doi: 10.1021/jp801245h. Epub 2008 Jun 18. J Phys Chem B. 2008. PMID: 18558755
Chem. 2000, 21, 1049-1074] and parmbsc0 [Perez, A.; Marchan, I.; Svozil, D.; Sponer, J.; Cheatham, T. E.; Laughten, C. A.; Orozco, M. ...
Chem. 2000, 21, 1049-1074] and parmbsc0 [Perez, A.; Marchan, I.; Svozil, D.; Sponer, J.; Cheatham, T. E.; Laughten, C. A.; Oro …
44 results