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Computational prediction of protein-protein interactions.
Skrabanek L, Saini HK, Bader GD, Enright AJ. Skrabanek L, et al. Among authors: bader gd. Mol Biotechnol. 2008 Jan;38(1):1-17. doi: 10.1007/s12033-007-0069-2. Epub 2007 Aug 14. Mol Biotechnol. 2008. PMID: 18095187 Review.
The BioPAX community standard for pathway data sharing.
Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, Kandasamy K, Lopez-Fuentes AC, Mi H, Pichler E, Rodchenkov I, Splendiani A, Tkachev S, Zucker J, Gopinath G, Rajasimha H, Ramakrishnan R, Shah I, Syed M, Anwar N, Babur O, Blinov M, Brauner E, Corwin D, Donaldson S, Gibbons F, Goldberg R, Hornbeck P, Luna A, Murray-Rust P, Neumann E, Ruebenacker O, Samwald M, van Iersel M, Wimalaratne S, Allen K, Braun B, Whirl-Carrillo M, Cheung KH, Dahlquist K, Finney A, Gillespie M, Glass E, Gong L, Haw R, Honig M, Hubaut O, Kane D, Krupa S, Kutmon M, Leonard J, Marks D, Merberg D, Petri V, Pico A, Ravenscroft D, Ren L, Shah N, Sunshine M, Tang R, Whaley R, Letovksy S, Buetow KH, Rzhetsky A, Schachter V, Sobral BS, Dogrusoz U, McWeeney S, Aladjem M, Birney E, Collado-Vides J, Goto S, Hucka M, Le Novère N, Maltsev N, Pandey A, Thomas P, Wingender E, Karp PD, Sander C, Bader GD. Demir E, et al. Among authors: bader gd. Nat Biotechnol. 2010 Sep;28(9):935-42. doi: 10.1038/nbt.1666. Epub 2010 Sep 9. Nat Biotechnol. 2010. PMID: 20829833 Free PMC article.
Computational prediction of cancer-gene function.
Hu P, Bader G, Wigle DA, Emili A. Hu P, et al. Nat Rev Cancer. 2007 Jan;7(1):23-34. doi: 10.1038/nrc2036. Epub 2006 Dec 14. Nat Rev Cancer. 2007. PMID: 17167517 Review.
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R. Hermjakob H, et al. Nat Biotechnol. 2004 Feb;22(2):177-83. doi: 10.1038/nbt926. Nat Biotechnol. 2004. PMID: 14755292
Pathguide: a pathway resource list.
Bader GD, Cary MP, Sander C. Bader GD, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D504-6. doi: 10.1093/nar/gkj126. Nucleic Acids Res. 2006. PMID: 16381921 Free PMC article.
Pathway Commons, a web resource for biological pathway data.
Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C. Cerami EG, et al. Among authors: bader gd. Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071392 Free PMC article.
Pathway information for systems biology.
Cary MP, Bader GD, Sander C. Cary MP, et al. Among authors: bader gd. FEBS Lett. 2005 Mar 21;579(8):1815-20. doi: 10.1016/j.febslet.2005.02.005. FEBS Lett. 2005. PMID: 15763557 Free article. Review.
328 results