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Identification of 14-3-3 theta as an antigen that induces a humoral response in lung cancer.
Pereira-Faca SR, Kuick R, Puravs E, Zhang Q, Krasnoselsky AL, Phanstiel D, Qiu J, Misek DE, Hinderer R, Tammemagi M, Landi MT, Caporaso N, Pfeiffer R, Edelstein C, Goodman G, Barnett M, Thornquist M, Brenner D, Hanash SM. Pereira-Faca SR, et al. Among authors: phanstiel d. Cancer Res. 2007 Dec 15;67(24):12000-6. doi: 10.1158/0008-5472.CAN-07-2913. Cancer Res. 2007. PMID: 18089831
A mouse to human search for plasma proteome changes associated with pancreatic tumor development.
Faca VM, Song KS, Wang H, Zhang Q, Krasnoselsky AL, Newcomb LF, Plentz RR, Gurumurthy S, Redston MS, Pitteri SJ, Pereira-Faca SR, Ireton RC, Katayama H, Glukhova V, Phanstiel D, Brenner DE, Anderson MA, Misek D, Scholler N, Urban ND, Barnett MJ, Edelstein C, Goodman GE, Thornquist MD, McIntosh MW, DePinho RA, Bardeesy N, Hanash SM. Faca VM, et al. Among authors: phanstiel d. PLoS Med. 2008 Jun 10;5(6):e123. doi: 10.1371/journal.pmed.0050123. PLoS Med. 2008. PMID: 18547137 Free PMC article.
Proteomic and phosphoproteomic comparison of human ES and iPS cells.
Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Phanstiel DH, et al. Nat Methods. 2011 Sep 11;8(10):821-7. doi: 10.1038/nmeth.1699. Nat Methods. 2011. PMID: 21983960 Free PMC article.
Proteomics and pluripotency.
Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. Brumbaugh J, et al. Crit Rev Biochem Mol Biol. 2011 Dec;46(6):493-506. doi: 10.3109/10409238.2011.624491. Epub 2011 Oct 15. Crit Rev Biochem Mol Biol. 2011. PMID: 21999516 Free PMC article. Review.
Bedtoolsr: An R package for genomic data analysis and manipulation.
Patwardhan MN, Wenger CD, Davis ES, Phanstiel DH. Patwardhan MN, et al. Among authors: phanstiel dh. J Open Source Softw. 2019;4(44):1742. doi: 10.21105/joss.01742. Epub 2019 Dec 6. J Open Source Softw. 2019. PMID: 31903447 Free PMC article.
Plotgardener: cultivating precise multi-panel figures in R.
Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Among authors: phanstiel dh. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.
Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements.
Tycko J, Wainberg M, Marinov GK, Ursu O, Hess GT, Ego BK, Aradhana, Li A, Truong A, Trevino AE, Spees K, Yao D, Kaplow IM, Greenside PG, Morgens DW, Phanstiel DH, Snyder MP, Bintu L, Greenleaf WJ, Kundaje A, Bassik MC. Tycko J, et al. Among authors: phanstiel dh. Nat Commun. 2019 Sep 6;10(1):4063. doi: 10.1038/s41467-019-11955-7. Nat Commun. 2019. PMID: 31492858 Free PMC article.
54 results