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The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E. Swarbreck D, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D1009-14. doi: 10.1093/nar/gkm965. Epub 2007 Nov 5. Nucleic Acids Res. 2008. PMID: 17986450 Free PMC article.
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.
Lamesch P, Berardini TZ, Li D, Swarbreck D, Wilks C, Sasidharan R, Muller R, Dreher K, Alexander DL, Garcia-Hernandez M, Karthikeyan AS, Lee CH, Nelson WD, Ploetz L, Singh S, Wensel A, Huala E. Lamesch P, et al. Among authors: swarbreck d. Nucleic Acids Res. 2012 Jan;40(Database issue):D1202-10. doi: 10.1093/nar/gkr1090. Epub 2011 Dec 2. Nucleic Acids Res. 2012. PMID: 22140109 Free PMC article.
GFam: a platform for automatic annotation of gene families.
Sasidharan R, Nepusz T, Swarbreck D, Huala E, Paccanaro A. Sasidharan R, et al. Among authors: swarbreck d. Nucleic Acids Res. 2012 Oct;40(19):e152. doi: 10.1093/nar/gks631. Epub 2012 Jul 11. Nucleic Acids Res. 2012. PMID: 22790981 Free PMC article.
GENCODE: producing a reference annotation for ENCODE.
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R. Harrow J, et al. Among authors: swarbreck d. Genome Biol. 2006;7 Suppl 1(Suppl 1):S4.1-9. doi: 10.1186/gb-2006-7-s1-s4. Epub 2006 Aug 7. Genome Biol. 2006. PMID: 16925838 Free PMC article.
An Improved microRNA Annotation of the Canine Genome.
Penso-Dolfin L, Swofford R, Johnson J, Alföldi J, Lindblad-Toh K, Swarbreck D, Moxon S, Di Palma F. Penso-Dolfin L, et al. Among authors: swarbreck d. PLoS One. 2016 Apr 27;11(4):e0153453. doi: 10.1371/journal.pone.0153453. eCollection 2016. PLoS One. 2016. PMID: 27119849 Free PMC article.
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD. Clavijo BJ, et al. Among authors: swarbreck d. Genome Res. 2017 May;27(5):885-896. doi: 10.1101/gr.217117.116. Genome Res. 2017. PMID: 28420692 Free PMC article.
DNA sequence and analysis of human chromosome 9.
Humphray SJ, Oliver K, Hunt AR, Plumb RW, Loveland JE, Howe KL, Andrews TD, Searle S, Hunt SE, Scott CE, Jones MC, Ainscough R, Almeida JP, Ambrose KD, Ashwell RI, Babbage AK, Babbage S, Bagguley CL, Bailey J, Banerjee R, Barker DJ, Barlow KF, Bates K, Beasley H, Beasley O, Bird CP, Bray-Allen S, Brown AJ, Brown JY, Burford D, Burrill W, Burton J, Carder C, Carter NP, Chapman JC, Chen Y, Clarke G, Clark SY, Clee CM, Clegg S, Collier RE, Corby N, Crosier M, Cummings AT, Davies J, Dhami P, Dunn M, Dutta I, Dyer LW, Earthrowl ME, Faulkner L, Fleming CJ, Frankish A, Frankland JA, French L, Fricker DG, Garner P, Garnett J, Ghori J, Gilbert JG, Glison C, Grafham DV, Gribble S, Griffiths C, Griffiths-Jones S, Grocock R, Guy J, Hall RE, Hammond S, Harley JL, Harrison ES, Hart EA, Heath PD, Henderson CD, Hopkins BL, Howard PJ, Howden PJ, Huckle E, Johnson C, Johnson D, Joy AA, Kay M, Keenan S, Kershaw JK, Kimberley AM, King A, Knights A, Laird GK, Langford C, Lawlor S, Leongamornlert DA, Leversha M, Lloyd C, Lloyd DM, Lovell J, Martin S, Mashreghi-Mohammadi M, Matthews L, McLaren S, McLay KE, McMurray A, Milne S, Nickerson T, Nisbett J, Nordsiek G, Pearce AV, Peck AI, Porter KM, Pandian R,… See abstract for full author list ➔ Humphray SJ, et al. Among authors: swarbreck d. Nature. 2004 May 27;429(6990):369-74. doi: 10.1038/nature02465. Nature. 2004. PMID: 15164053 Free PMC article.
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