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The minimum information about a proteomics experiment (MIAPE).
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. Taylor CF, et al. Among authors: souda p. Nat Biotechnol. 2007 Aug;25(8):887-93. doi: 10.1038/nbt1329. Nat Biotechnol. 2007. PMID: 17687369 Review.
mzML--a community standard for mass spectrometry data.
Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, Montecchi-Palazzi L, Tasman N, Coleman M, Reisinger F, Souda P, Hermjakob H, Binz PA, Deutsch EW. Martens L, et al. Among authors: souda p. Mol Cell Proteomics. 2011 Jan;10(1):R110.000133. doi: 10.1074/mcp.R110.000133. Epub 2010 Aug 17. Mol Cell Proteomics. 2011. PMID: 20716697 Free PMC article.
Sequencing covalent modifications of membrane proteins.
Whitelegge JP, Laganowsky A, Nishio J, Souda P, Zhang H, Cramer WA. Whitelegge JP, et al. Among authors: souda p. J Exp Bot. 2006;57(7):1515-22. doi: 10.1093/jxb/erj163. Epub 2006 Mar 30. J Exp Bot. 2006. PMID: 16574746
Top-down mass spectrometry of integral membrane proteins.
Whitelegge J, Halgand F, Souda P, Zabrouskov V. Whitelegge J, et al. Among authors: souda p. Expert Rev Proteomics. 2006 Dec;3(6):585-96. doi: 10.1586/14789450.3.6.585. Expert Rev Proteomics. 2006. PMID: 17181473 Review.
Detection of two distinct forms of apoC-I in great apes.
Puppione DL, Ryan CM, Bassilian S, Souda P, Xiao X, Ryder OA, Whitelegge JP. Puppione DL, et al. Among authors: souda p. Comp Biochem Physiol Part D Genomics Proteomics. 2010 Mar;5(1):73-9. doi: 10.1016/j.cbd.2009.12.003. Comp Biochem Physiol Part D Genomics Proteomics. 2010. PMID: 20209111 Free PMC article.
47 results