Shmulevich I - Search Results

1

Simcluster: clustering enumeration gene expression data on the simplex space.

Vêncio RZ, Varuzza L, de B Pereira CA, Brentani H, Shmulevich I. Vêncio RZ, et al. Among authors: shmulevich i. BMC Bioinformatics. 2007 Jul 11;8:246. doi: 10.1186/1471-2105-8-246. BMC Bioinformatics. 2007. PMID: 17625017 Free PMC article.

2

ProbCD: enrichment analysis accounting for categorization uncertainty.

Vêncio RZ, Shmulevich I. Vêncio RZ, et al. Among authors: shmulevich i. BMC Bioinformatics. 2007 Oct 12;8:383. doi: 10.1186/1471-2105-8-383. BMC Bioinformatics. 2007. PMID: 17935624 Free PMC article.

3

Systems biology driven software design for the research enterprise.

Boyle J, Cavnor C, Killcoyne S, Shmulevich I. Boyle J, et al. Among authors: shmulevich i. BMC Bioinformatics. 2008 Jun 25;9:295. doi: 10.1186/1471-2105-9-295. BMC Bioinformatics. 2008. PMID: 18578887 Free PMC article.

4

Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling.

Lee WW, Cui D, Czesnikiewicz-Guzik M, Vencio RZ, Shmulevich I, Aderem A, Weyand CM, Goronzy JJ. Lee WW, et al. Among authors: shmulevich i. Rejuvenation Res. 2008 Dec;11(6):1001-11. doi: 10.1089/rej.2008.0747. Rejuvenation Res. 2008. PMID: 19072254 Free PMC article.

5

Adaptable data management for systems biology investigations.

Boyle J, Rovira H, Cavnor C, Burdick D, Killcoyne S, Shmulevich I. Boyle J, et al. Among authors: shmulevich i. BMC Bioinformatics. 2009 Mar 6;10:79. doi: 10.1186/1471-2105-10-79. BMC Bioinformatics. 2009. PMID: 19265554 Free PMC article.

6

A data integration framework for prediction of transcription factor targets.

Nykter M, Lähdesmäki H, Rust A, Thorsson V, Shmulevich I. Nykter M, et al. Among authors: shmulevich i. Ann N Y Acad Sci. 2009 Mar;1158:205-14. doi: 10.1111/j.1749-6632.2008.03758.x. Ann N Y Acad Sci. 2009. PMID: 19348642 Free PMC article.

7

Fewer permutations, more accurate P-values.

Knijnenburg TA, Wessels LF, Reinders MJ, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. Bioinformatics. 2009 Jun 15;25(12):i161-8. doi: 10.1093/bioinformatics/btp211. Bioinformatics. 2009. PMID: 19477983 Free PMC article.

8

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.

Burdick DB, Cavnor CC, Handcock J, Killcoyne S, Lin J, Marzolf B, Ramsey SA, Rovira H, Bressler R, Shmulevich I, Boyle J. Burdick DB, et al. Among authors: shmulevich i. BMC Bioinformatics. 2010 Jul 14;11:377. doi: 10.1186/1471-2105-11-377. BMC Bioinformatics. 2010. PMID: 20630057 Free PMC article.

9

EPEPT: a web service for enhanced P-value estimation in permutation tests.

Knijnenburg TA, Lin J, Rovira H, Boyle J, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. BMC Bioinformatics. 2011 Oct 24;12:411. doi: 10.1186/1471-2105-12-411. BMC Bioinformatics. 2011. PMID: 22024252 Free PMC article.

10

Binary analysis and optimization-based normalization of gene expression data.

Shmulevich I, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Apr;18(4):555-65. doi: 10.1093/bioinformatics/18.4.555. Bioinformatics. 2002. PMID: 12016053

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