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miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. Griffiths-Jones S, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4. doi: 10.1093/nar/gkj112. Nucleic Acids Res. 2006. PMID: 16381832 Free PMC article.
Rfam: an RNA family database.
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Griffiths-Jones S, et al. Nucleic Acids Res. 2003 Jan 1;31(1):439-41. doi: 10.1093/nar/gkg006. Nucleic Acids Res. 2003. PMID: 12520045 Free PMC article.
Rfam: annotating non-coding RNAs in complete genomes.
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Griffiths-Jones S, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D121-4. doi: 10.1093/nar/gki081. Nucleic Acids Res. 2005. PMID: 15608160 Free PMC article.
Pfam: clans, web tools and services.
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Finn RD, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51. doi: 10.1093/nar/gkj149. Nucleic Acids Res. 2006. PMID: 16381856 Free PMC article.
miRBase: tools for microRNA genomics.
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. Griffiths-Jones S, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. doi: 10.1093/nar/gkm952. Epub 2007 Nov 8. Nucleic Acids Res. 2008. PMID: 17991681 Free PMC article.
Rfam: updates to the RNA families database.
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40. doi: 10.1093/nar/gkn766. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953034 Free PMC article.
Rfam: Wikipedia, clans and the "decimal" release.
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062808 Free PMC article.
The Pfam protein families database.
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. Bateman A, et al. Nucleic Acids Res. 2002 Jan 1;30(1):276-80. doi: 10.1093/nar/30.1.276. Nucleic Acids Res. 2002. PMID: 11752314 Free PMC article.
The InterPro Database, 2003 brings increased coverage and new features.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. Mulder NJ, et al. Nucleic Acids Res. 2003 Jan 1;31(1):315-8. doi: 10.1093/nar/gkg046. Nucleic Acids Res. 2003. PMID: 12520011 Free PMC article.
99 results