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Thermodynamically based DNA strand design.
Tulpan D, Andronescu M, Chang SB, Shortreed MR, Condon A, Hoos HH, Smith LM. Tulpan D, et al. Among authors: andronescu m. Nucleic Acids Res. 2005 Sep 6;33(15):4951-64. doi: 10.1093/nar/gki773. Print 2005. Nucleic Acids Res. 2005. PMID: 16145053 Free PMC article.
To heuristically search for good strand sets, our algorithm uses a conflict-driven stochastic local search approach, which is known to be effective in solving comparable search problems. The PairFold program of Andronescu et al. [M. Andronescu, Z. C. Zhang an …
To heuristically search for good strand sets, our algorithm uses a conflict-driven stochastic local search approach, which is known to be ef …
A thermodynamic approach to designing structure-free combinatorial DNA word sets.
Shortreed MR, Chang SB, Hong D, Phillips M, Campion B, Tulpan DC, Andronescu M, Condon A, Hoos HH, Smith LM. Shortreed MR, et al. Among authors: andronescu m. Nucleic Acids Res. 2005 Sep 2;33(15):4965-77. doi: 10.1093/nar/gki812. Print 2005. Nucleic Acids Res. 2005. PMID: 16284197 Free PMC article.
A new algorithm for RNA secondary structure design.
Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A. Andronescu M, et al. J Mol Biol. 2004 Feb 20;336(3):607-24. doi: 10.1016/j.jmb.2003.12.041. J Mol Biol. 2004. PMID: 15095976
Free energy estimation of short DNA duplex hybridizations.
Tulpan D, Andronescu M, Leger S. Tulpan D, et al. Among authors: andronescu m. BMC Bioinformatics. 2010 Feb 24;11:105. doi: 10.1186/1471-2105-11-105. BMC Bioinformatics. 2010. PMID: 20181279 Free PMC article.
39 results